PRPF39
Pre-mRNA-processing factor 39
Protein Summary
Involved in pre-mRNA splicing.
- ENST00000355765
- ENSP00000348010
- ENSG00000185246
Most Knowledge About | Knowledge Value
(0 to 1 scale) | ||
|---|---|---|---|
interacting protein | 0.79 | ||
tissue sample | 0.67 | ||
histone modification site profile | 0.63 | ||
cell line | 0.54 | ||
transcription factor binding site profile | 0.54 | ||
Protein Classes
IDG Development Level Summary
These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:
Pubmed score: 5.16 (req: < 5)
Gene RIFs: 1 (req: <= 3)
Antibodies: 128 (req: <= 50)
These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:
Pubmed score: 5.16 (req: >= 5)
Gene RIFs: 1 (req: > 3)
Antibodies: 128 (req: > 50)
- OR - satisfy the following criterion:
Gene Ontology Term: 1
Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions
Active Ligand: 0
Target has at least one approved drug - AND - satisfies the preceding conditions
Active Drug: 0
Expression Data (0 Tissues)
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Related Tools (3)
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
Active Ligands (0)
Protein-Protein Interactions (129)
KCTD15
Novelty: 0.05277304
p_int: 0.999929745
p_ni: 0.000070253
p_wrong: 2e-9
Score: 0.29
Data Source: BioPlex,STRINGDB
ZNF318
Novelty: 0.03072403
p_int: 0.964604976
p_ni: 0.035395022
p_wrong: 2e-9
Score: 0.245
Data Source: BioPlex,STRINGDB
TRNAU1AP
Novelty: 0.10301757
p_int: 0.87953816
p_ni: 0.12046184
Score: 0.975
Data Source: BioPlex,STRINGDB
Nearest Tclin Targets
Pathways (0)
Viral Interactions (0)
Gene Ontology Terms (4)
Components (3)
Processes (1)
GO Term | Evidence | Assigned by | ||
|---|---|---|---|---|
Inferred from Biological aspect of Ancestor (IBA) | GO_Central | |||
Inferred from Biological aspect of Ancestor (IBA) | GO_Central | |||
Inferred from Biological aspect of Ancestor (IBA) | GO_Central | |||
Disease Associations (null)
GWAS Traits (0)
Find similar targets by:
IDG Resources
Orthologs (13)
1 – 5 of 13
Species | Name | Source ID | Gene ID | OMA | EggNOG | Inparanoid | ||
|---|---|---|---|---|---|---|---|---|
Chimp | pre-mRNA processing factor 39 | VGNC:3325 | 739795 | |||||
Macaque | pre-mRNA processing factor 39 | 702306 | ||||||
Mouse | MGI:104602 | 328110 | ||||||
Rat | RGD:1308702 | 314171 | ||||||
Dog | pre-mRNA processing factor 39 | VGNC:45024 | 480305 | |||||
Species | Name | OMA | EggNOG | Inparanoid | ||
|---|---|---|---|---|---|---|
Chimp | pre-mRNA processing factor 39 | |||||
Macaque | pre-mRNA processing factor 39 | |||||
Mouse | ||||||
Rat | ||||||
Dog | pre-mRNA processing factor 39 | |||||
Publication Statistics
PubMed Score 5.16
PubMed score by year
PubTator Score 2.20
PubTator score by year
Related Publications
Text Mined References (7)
GeneRif Annotations (1)
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PMID | Year | Title |
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