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Tbio
PRPF39
Pre-mRNA-processing factor 39

Protein Summary
Description
Involved in pre-mRNA splicing.
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000355765
  • ENSP00000348010
  • ENSG00000185246
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
interacting protein
0.79
tissue sample
0.67
histone modification site profile
0.63
cell line
0.54
transcription factor binding site profile
0.54


IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 5.16   (req: < 5)
Gene RIFs: 1   (req: <= 3)
Antibodies: 128   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 5.16   (req: >= 5)
Gene RIFs: 1   (req: > 3)
Antibodies: 128   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Term: 1
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligand: 0
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
Expression Data (0 Tissues)
No expression data found
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Related Tools (3)
GENEVA
Thumbnail image for GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
Thumbnail image for GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
Thumbnail image for ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
No approved drugs found
Active Ligands (0)
No active ligands found
Protein-Protein Interactions (129)
KCTD15
Tbio
Novelty:  0.05277304
p_int:  0.999929745
p_ni:  0.000070253
p_wrong:  2e-9
Score:  0.29
Data Source:  BioPlex,STRINGDB
ZNF318
Tbio
Novelty:  0.03072403
p_int:  0.964604976
p_ni:  0.035395022
p_wrong:  2e-9
Score:  0.245
Data Source:  BioPlex,STRINGDB
TRNAU1AP
Tbio
Novelty:  0.10301757
p_int:  0.87953816
p_ni:  0.12046184
Score:  0.975
Data Source:  BioPlex,STRINGDB
SNRNP70
Tbio
Novelty:  0.00116631
Score:  0.967
Data Source:  STRINGDB
SNRPC
Tbio
Novelty:  0.02049921
Score:  0.967
Data Source:  STRINGDB
SF3B1
Tbio
Novelty:  0.0128965
Score:  0.965
Data Source:  STRINGDB
LUC7L
Tbio
Novelty:  0.05748021
Score:  0.958
Data Source:  STRINGDB
LUC7L2
Tdark
Novelty:  0.36989457
Score:  0.951
Data Source:  STRINGDB
RBM25
Tbio
Novelty:  0.05557892
Score:  0.95
Data Source:  STRINGDB
LUC7L3
Tbio
Novelty:  0.06202568
Score:  0.95
Data Source:  STRINGDB
Nearest Tclin Targets
Nearest Tclin calculations are only available for targets with KEGG Pathway annotations.
Pathways (0)
No pathways found
Viral Interactions (0)
No viral interactions found
Gene Ontology Terms (4)
Find Similar Targets
Items per page:
10
1 – 3 of 3
GO Term
Evidence
Assigned by
Inferred from Biological aspect of Ancestor (IBA)
GO_Central
Inferred from Biological aspect of Ancestor (IBA)
GO_Central
Inferred from Biological aspect of Ancestor (IBA)
GO_Central
Disease Associations (null)
No disease associations found
GWAS Traits (0)
No GWAS traits found
IDG Resources
No IDG generated resources found
Orthologs (13)
1 – 5 of 13
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
pre-mRNA processing factor 39
VGNC:3325
739795
Macaque
pre-mRNA processing factor 39
702306
Mouse
MGI:104602
328110
Rat
RGD:1308702
314171
Dog
pre-mRNA processing factor 39
VGNC:45024
480305
Species
Name
OMA
EggNOG
Inparanoid
Chimp
pre-mRNA processing factor 39
Macaque
pre-mRNA processing factor 39
Mouse
Rat
Dog
pre-mRNA processing factor 39
Publication Statistics
PubMed Score 5.16
PubMed score by year
PubTator Score 2.20
PubTator score by year
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Related Publications
Items per page:
0 of 0
PMID
Year
Title