Property Summary

NCBI Gene PubMed Count 10
PubMed Score 1.81

Knowledge Summary

Patent

No data available

TINX Plot

  Disease Sources (3)

Disease Target Count P-value
lung carcinoma 2844 5.71790826315405E-21
medulloblastoma, large-cell 6234 5.79684272988565E-6
atypical teratoid / rhabdoid tumor 4369 9.21960788061216E-5
adult high grade glioma 2148 2.1593848755025E-4
medulloblastoma 1524 3.17787340936506E-4
glioblastoma 5572 7.43959404180736E-4
primitive neuroectodermal tumor 3031 0.00244847056844078
astrocytic glioma 2241 0.0233778532414035
Disease Target Count Z-score Confidence
Carcinoma 2147 0.0 1.0
Disease Target Count Z-score Confidence
Refractive error 43 3.22 1.6

Expression

  Differential Expression (8)

Disease log2 FC p
astrocytic glioma 1.100 0.023
atypical teratoid / rhabdoid tumor 1.400 0.000
glioblastoma 1.400 0.001
medulloblastoma 1.600 0.000
medulloblastoma, large-cell 1.600 0.000
primitive neuroectodermal tumor 1.300 0.002
adult high grade glioma 1.400 0.000
lung carcinoma 1.900 0.000

Synonym

Accession Q9Y5E1 Q2M2U8 Q496X9 Q9NRJ8 PCDH-beta-9
Symbols PCDH3H
PCDH-BETA9

Gene

PANTHER Protein Class (2)

  Ortholog (2)

Species Source
Chimp OMA Inparanoid
Mouse OMA Inparanoid

AA Sequence

MKTRGFSFPRQRQVLFLFLFWGVSLAGSGFGRYSVTEETEKGSFVVNLAKDLGLAEGELAARGTRVVSDD      1 - 70
NKQYLLLDSHTGNLLTNEKLDREKLCGPKEPCMLYFQILMDDPFQIYRAELRVRDINDHSPVFRHKEMVL     71 - 140
KISENTAEGTAFRLERAQDPDEGHNSIQNYTISSNSFFHIKISGSDEGMIYPELVLDKALDREEQEELSL    141 - 210
TLTALDGGSPSRSGTSTIRIVVLDVNDNAPQFAQALYETQAPENSPVGSLIVKVSAGDADSGVNAEVSYS    211 - 280
FFDASEDILTTFQINPFSGEIFLRELLDYELVNSYKINIQAMDGGGLSARCTVLIKVLDSNDNPPELIIS    281 - 350
SLSNSVAENSPGIVLAVFKIKDRDSGENGKTICYVQDNLPFFLKPSVDNFYILMTEGALDRESKAEYNIT    351 - 420
ITVTDLGTPRLKTEHSITLQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL    421 - 490
LPPQDPHLPLASLVSINADNGHLFALRSLDYEALQAFDFRVGASDRGSPALSSEALVRVLVLDANDNSPF    491 - 560
VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL    561 - 630
SERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADLLTVYLVVALASVSSL    631 - 700
FLLSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSGTGTLFQSYQYEVCLTGGSETGEFKFLKPI    701 - 770
TPHLPPHRGGKEIEENSTLPNSFGFNY                                               771 - 797
//

Text Mined References (10)

PMID Year Title
16344560 2006 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.
15489334 2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
12477932 2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
12231349 2002 Protocadherins.
11322959 2001 The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number.
11230163 2001 Comparative DNA sequence analysis of mouse and human protocadherin gene clusters.
10835267 2000 Phylogenetic analysis of the cadherin superfamily allows identification of six major subfamilies besides several solitary members.
10817752 2000 Cadherin superfamily genes: functions, genomic organization, and neurologic diversity.
10716726 2000 Large exons encoding multiple ectodomains are a characteristic feature of protocadherin genes.
10380929 1999 A striking organization of a large family of human neural cadherin-like cell adhesion genes.