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  6. Protein very KIND

Tdark Protein very KIND

Probable guanine nucleotide exchange factor (GEF).

 Comments

Property Summary

NCBI Gene PubMed Count 6
PubMed Score 1.21
PubTator Score 1.78

Knowledge Summary

Patent

No data available

TINX Plot

  Disease Sources (2)

Disease Target Count P-value
oligodendroglioma 2849 5.14452221750154E-14
astrocytoma 1493 3.07276318444184E-12
glioblastoma 5572 1.20540756130198E-11
atypical teratoid/rhabdoid tumor 1095 3.08831698458349E-11
pediatric high grade glioma 2712 1.76889115127784E-9
medulloblastoma, large-cell 6234 9.87770622271094E-9
group 3 medulloblastoma 2254 1.12309830490924E-8
pilocytic astrocytoma 3086 3.136422861269E-8
posterior fossa group A ependymoma 1511 1.93982183429351E-7
primitive neuroectodermal tumor 3031 0.0161640309635203
Disease Target Count Z-score Confidence
Carcinoma 2147 0.0 1.0

Expression

  Differential Expression (10)

Disease log2 FC p
astrocytoma -1.100 0.000
glioblastoma -2.500 0.000
oligodendroglioma -1.300 0.000
group 3 medulloblastoma -3.800 0.000
atypical teratoid/rhabdoid tumor -2.800 0.000
medulloblastoma, large-cell -3.400 0.000
primitive neuroectodermal tumor -1.900 0.016
pediatric high grade glioma -2.400 0.000
pilocytic astrocytoma -2.700 0.000
posterior fossa group A ependymoma -1.300 0.000

Synonym

Accession Q76NI1 B0QZC5 Q5T233 Q6ZNH8 Q8TEE5 Q96LV7 Q9C095
Symbols RASGEF2
C10orf23
bB439H18.3

Gene

KNDC1

PANTHER Protein Class (3)

  Ortholog (8)

Species Source
Macaque EggNOG Inparanoid
Mouse OMA EggNOG Inparanoid
Rat OMA EggNOG Inparanoid
Horse OMA EggNOG
Cow OMA EggNOG
Pig OMA EggNOG
Chicken OMA EggNOG
Xenopus OMA EggNOG

 GO Function (1)

 GO Component (3)

 GO Process (4)

 Compartment GO Term (1)

 MGI Term (1)

 HCA RNA Cell Line (40)

See all...

 UniProt Keyword (8)

Gene RIF (2)

PMID Text
24788352 KNDC1 knockdown promoted HUVEC proliferation via the extracellular signal-regulated kinase signaling pathway and delayed HUVEC senescence by inhibiting the p53-p21-p16 transduction cascade.
16385451 Observational study of gene-disease association. (HuGE Navigator)

AA Sequence 

MQAMDPAAADLYEEDGKDLDFYDFEPLPTLPEDEENVSLADILSLRDRGLSEQEAWAVCLECSLSMRSVA      1 - 70
HAAIFQSLCITPDTLAFNTSGNVCFMEQLSDDPEGAFVPPEFDVTGNTFEAHIYSLGATLKAALEYVAEP     71 - 140
TLEPRLSQDLEALLSRMQAEDPGDRPDLESIIALCEEKLQLTSSCRVCRSLSAVGRRVLSIESFGALQDV    141 - 210
SESSWRERPAPGNAGPRRPPGDPSTDPEVLPTPEGPESETSRGPRASPTKALLSTPVRNGESHSREGLAG    211 - 280
LVLDAERTLGELDRDALRRSRLRKVQTFPRLLSDSPEATLCLPLTRGKSQLPISELFSPDPRKAFLDRKN    281 - 350
GLSSFQAQPKCRLWPEQEPEHQLGRVPCAGRSTDRGPGVPGSPGQPETSHPSQGPAEAPADPRDASGEAQ    351 - 420
TPRDDERIPEGARQLESAAAEQWVSLQDLLSQLGRPFREYELWALCLACLRALQTRPEHPAYLCLDSVLV    421 - 490
AEDGAVLFQPPPANGSYDSFFLAPELAEERLVTEKASVYCVAAVLWTAAKFSVPRNHKLALPRRLKTLLL    491 - 560
DMARRSAPERPSAAEAIKVCGSYLLQRGMDSRKILAHLRASICQVYQEEETISLQNAFSVVELKPSVAPA    561 - 630
PEPSPGFLPVNSDTGLVAVPGPVPGQHPCGEEATQLPAAFTSEATHFKPIVLAQNASVARDQPALAQEES    631 - 700
EERGGQREGEGEEKLSLEAHAGSPSLKTPDGPVPGPGPQGAAPEPLGASVQRDSAQGRPCPPPQAPANQP    701 - 770
EGASSAAPGSPVPAPPTKASALPVEQGPAEPIPPGVASGGLRPDALGPTTAHHGPRHPPKPPRSKATERP    771 - 840
GQEPEGPGATPAGERDDQSPDSVPERPRPADRRLCLPCVDASPLPGRTACPSLQEATRLIQEEFAFDGYL    841 - 910
DNGLEALIMGEYIFALKDLTFATFCGAISEKFCDLYWDEKLLQNLFKVVNGQASPSPSTAEEAGSQLEGS    911 - 980
QSPRSPSSKRPSLHRLGKEKPAMARTSSRAPCSPTSVSDVDSDALSRGNFEVGFRPQRSVKAERAQQPEA    981 - 1050
GEDRRPAGGASDVEAVTRLARSKGVGPALSPGPAGFQSCSPGWCSAFYEADCFGADVHNYVKDLGRQQAD   1051 - 1120
GALPDAQSPELEQQLMMEKRNYRKTLKFYQKLLQKEKRNKGSDVKTMLSKLKGQLEEMKSRVQFLSLVKK   1121 - 1190
YLQVMYAERWGLEPCTLPVIVNIAAAPCDTLDFSPLDESSSLIFYNVNKHPGGRQKARILQAGTPLGLMA   1191 - 1260
YLYSSDAFLEGYVQQFLYTFRYFCTPHDFLHFLLDRINSTLTRAHQDPTSTFTKIYRRSLCVLQAWVEDC   1261 - 1330
YAVDFPRNSGLLGKLEDFISSKILPLDGSAKHLLGLLEVGMDRRAEGNPRGTDLENPREAEEDARPFNAL   1331 - 1400
CKRLSEDGISRKSFPWRLPRGNGLVLPPHKERPYTIAAALPKPCFLEDFYGPCAKTSEKGPYFLTEYSTH   1401 - 1470
QLFSQLTLLQQELFQKCHPVHFLNSRALGVMDKSTAIPKASSSESLSAKTCSLFLPNYVQDKYLLQLLRN   1471 - 1540
ADDVSTWVAAEIVTSHTSKLQVNLLSKFLLIAKSCYEQRNFATAMQILSGLEHLAVRQSPAWRILPAKIA   1541 - 1610
EVMEELKAVEVFLKSDSLCLMEGRRFRAQPTLPSAHLLAMHIQQLETGGFTMTNGAHRWSKLRNIAKVVS   1611 - 1680
QVHAFQENPYTFSPDPKLQSYLKQRIARFSGADISTLAADSRANFHQVSSEKHSRKIQDKLRRMKATFQ    1681 - 1749
//

Text Mined References (8)

PMID Year Title
24788352 2014 KNDC1 knockdown protects human umbilical vein endothelial cells from senescence.
16751776 2006 A germline-specific class of small RNAs binds mammalian Piwi proteins.
16385451 2006 A scan of chromosome 10 identifies a novel locus showing strong association with late-onset Alzheimer disease.
16344560 2006 Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes.
15164054 2004 The DNA sequence and comparative analysis of human chromosome 10.
14702039 2004 Complete sequencing and characterization of 21,243 full-length human cDNAs.
12477932 2002 Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.
11214970 2000 Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro.