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A classification of the degree to which proteins are studied or not studied, as evidenced by publications, tool compounds and other features.
See details for ARL14EP
Radar plot depicting the variety of knowledge obtained by Pharos for this target.
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Primary UniProt accession number
A broad classification of protein families
Number of high confidence protein protein interactions for this target.
Jensen Lab generated fractional counting score for the prevalence of this target in PubMed articles.
A score based on text mining PubMed data.
Number of antibodies for this target listed in antibodypedia.com.
Tin-X metric for the relative scarcity of specific publications for this target.
See details for ALKBH6
See details for UBOX5
See details for ARPC5L
See details for FLRT1
See details for TM4SF20
See details for TSPAN9
See details for ZFYVE21
See details for CDC42EP1
See details for FOCAD
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See interacting proteins on String-db.org
Download Data for TRAP1
Gene symbols, accession ids and various other target identifiers. Also contains the illumination graph which highlights the amount of knowledge available. Click the '?' button for more information
Description of the protein which includes the UniProt Function and the NCBI Gene Summary.
Uniprot linked accession values, symbols or commonly used abbreviations associated with this particular target.
Approved gene symbol with link to HUGO Gene Nomenclature Committee.
Ensembl identifier links.
List of abbreviations or acronyms of the full target name.
Radar plot depicting the variety of knowledge obtained by Pharos for a particular target. The more spikes in the plot, the more variety. The longer the length, the higher the quantity of that particular knowledge. Clicking the illumination graph opens an expanded view to explore the plot fuller by seeing plot with annotations of the different radii.
Table representing the top 5 knowledge attributes in the illumination graph. The knowledge value property is on a scale of 0 to 1.
Descriptions of the IDG illumination level highlighting the milestones attained in the research of this target.
Jensen Lab generated fractional counting score for the prevalence of this gene in Pubmed articles.
Total count of NCBI Gene Reference Into Function hits for target listed in parenthesis, and summary table with links to publications per PMID with the specific text in article that includes the reported target.
Number of antibodies for this target listed in antibodypedia.com
Number of Gene Ontology (GO) annotations for this target, consisting of the sum of GO Functions and GO Processes.
Ligands associated with a target, listed in ChEMBL, with activity over a cutoff relative to the targetclass.
Approved drugs associated with a target.
Amino acid sequence, and a detailed sequence structure viewer via the Uniprot Protvista viewer.
Bar chart summarizing the number of times each residue appears in the sequence. The bars represent the actual counts, while the gold lines represent the expected counts given the frequency of the amino acids in all human genes.
Amino acid sequence of the target protein.
The protein sequence aligned with structural and functional annotations, as well as disease variants.
https://unmtid-shinyapps.net/shiny/tiga/?gene=ENSG00000126602
https://genevatool.org/gene_table?gene_name=TRAP1
https://glygen.org/protein/Q12931
https://maayanlab.cloud/archs4/gene/TRAP1
A list of related tools that have content for this protein.
Active ligands that are associated with this target.
Activity value measured for the ligand against the given target. Units are -log (M), for example 1nM would correspond to a value of 9.
Opens the Ligand List with this set of ligands
List of protein to protein interactions associated with this gene. Interactions are reported from Reactome, BioPlex, and StringDB. StringDB score must be above 0.400 to be shown here. Explore on the String-DB website to see lower likelihood targets.
Opens the Target List with this set of targets
Arylsulfatase F
BioPlex score representing the probability of the protein protein interaction.
BioPlex score representing the probability that the interaction detected was non-specific.
Data Sources reporting this protein-protein interaction.
Formin-binding protein 4
BioPlex score representing the probability that the interacting protein was wrongly identified.
Cytoplasmic dynein 1 heavy chain 1
Cell division cycle 5-like protein
String-DB score representing the confidence in the protein protein interaction.
Protein SGT1 homolog
Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial
Serine/threonine-protein kinase PINK1, mitochondrial
Splicing factor 3A subunit 2
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial
Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
Biochemical pathways containing the current target.
Pathways and diagrams from Reactome.
Find Targets with an overlapping set of Reactome Pathways
A network of biological classes describing the molecular function, cellular locations, and processes genes may carry out, as defined by the Gene Ontology Consortium.
Find Targets with an overlapping set of GO Functions
Find Targets with an overlapping set of GO Components
Find Targets with an overlapping set of GO Processes
Function terms describe molecular activities performed by gene products. Terms may be broad, such as "catalytic activity" or narrow, such as "adenylate cyclase activity".
Component terms describe locations relative to cellular structures in which a gene product performs a function.
Process terms describe larger "biological programs" accomplished by multiple molecular activities. Like Functions, Process terms can be broad, such as "DNA repair", or narrow, such as "pyrimidine nucleobase biosynthetic process".
Genome-wide association studies (GWAS) find associations between phenotypic traits and genes. Target Illumination GWAS Analytics (TIGA) scores and ranks those traits according to a subset of study parameters.
Explore on Target Illumination GWAS Analytics (TIGA)
List of targets within Pharos that are related to this target.
Occurrence of this target in up to 10 categories of UniProt keywords.
Find Targets with an overlapping set of UniProt Keywords
Occurrence of this target in up to 10 categories of GWAS Traits.
Find Targets with an overlapping set of GWAS Traits
Occurrence of this target in up to 10 categories of JAX/MGI Phenotypes.
Find Targets with an overlapping set of MGI Phenotypes
Orthologous proteins from other species, from OMA, EggNOG, and Inparanoid.
Statistics about the occurence of this target in literature, extracted via text mining. GeneRIFs,and text-mined publications are also displayed. For more details, click the '?' button.
The Pubmed Score (also sometimes referred to as the Jensen Score) is
derived from text mining a set of Pubmed abstracts.
Timeline of pubtator scores for each available year.