Protein Summary
Plays a role in the normal dynamic function of the endoplasmic reticulum (ER) and its associated microtubules (PubMed:23479643, PubMed:27813252). Required for secretory cargo traffic from the endoplasmic reticulum to the Golgi apparatus (PubMed:21478858). There are several documented fusion oncoproteins encoded partially by this gene. This gene also participates in several oncogenic rearrangements resulting in anaplastic lymphoma and mixoid chondrosarcoma, and may play a role in the NF-kappaB pathway. Multiple transcript variants have been found for this gene. [provided by RefSeq, Sep 2010]
- ENST00000240851
- ENSP00000240851
- ENSG00000114354
- ENST00000418917
- ENSP00000397182
- ENST00000476228
- ENSP00000417952
- ENST00000490574
- ENSP00000419960
- ENST00000615993
- ENSP00000479269
- ENST00000620299
- ENSP00000479981
- TF6
- HMSNP
- SPG57
- TRKT3
Most Knowledge About | Knowledge Value
(0 to 1 scale) | ||
---|---|---|---|
interacting protein | 0.96 | ||
disease perturbation | 0.9 | ||
drug perturbation | 0.87 | ||
transcription factor perturbation | 0.84 | ||
hub protein | 0.82 | ||
Protein Classes
IDG Development Level Summary
These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:
Pubmed score: 66.74 (req: < 5)
Gene RIFs: 22 (req: <= 3)
Antibodies: 278 (req: <= 50)
These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:
Pubmed score: 66.74 (req: >= 5)
Gene RIFs: 22 (req: > 3)
Antibodies: 278 (req: > 50)
- OR - satisfy the following criterion:
Gene Ontology Terms: 4
Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions
Active Ligand: 0
Target has at least one approved drug - AND - satisfies the preceding conditions
Active Drug: 0
Expression Data (0 Tissues)
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Related Tools (4)

TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.

GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.

GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.

ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
Active Ligands (0)
Protein-Protein Interactions (110)
SPINK5
Family: Enzyme
Novelty: 0.00451563
p_int: 0.99999984
p_ni: 1.25e-7
p_wrong: 3.5e-8
Score: 0.403
Data Source: BioPlex,STRINGDB
SEC31A
Novelty: 0.0350228
p_int: 0.999660019
p_ni: 0.000339981
Score: 0.984
Data Source: BioPlex,Reactome,STRINGDB
S100A3
Novelty: 0.03024004
p_int: 0.999636392
p_ni: 0.000363424
p_wrong: 1.84e-7
Score: 0.179
Data Source: BioPlex,STRINGDB
HEPHL1
Novelty: 0.44678065
p_int: 0.99494802
p_ni: 0.005051978
p_wrong: 2e-9
Data Source: BioPlex
DUSP14
Family: Enzyme
Novelty: 0.04013065
p_int: 0.978571125
p_ni: 0.021428875
Data Source: BioPlex
HNRNPCL1
Novelty: 1.05199828
p_int: 0.974690834
p_ni: 0.025309166
Score: 0.261
Data Source: BioPlex,STRINGDB
SEC13
Novelty: 0.00709413
p_int: 0.928268239
p_ni: 0.071731761
Score: 0.949
Data Source: BioPlex,Reactome,STRINGDB
Nearest Tclin Targets (4)
Downstream (4)
1 – 4 of 4
Pathways (11)
Reactome (8)
KEGG (2)
PathwayCommons (1)
Click on a row in the table to change the structure displayed.
Data Source | Name | Explore in Pharos | Explore in Source | ||
---|---|---|---|---|---|
Reactome | Asparagine N-linked glycosylation | ||||
Reactome | COPII-mediated vesicle transport | ||||
Reactome | ER to Golgi Anterograde Transport | ||||
Reactome | Membrane Trafficking | ||||
Reactome | Metabolism of proteins | ||||
Name | Explore in Pharos | Explore in Source | ||
---|---|---|---|---|
Asparagine N-linked glycosylation | ||||
COPII-mediated vesicle transport | ||||
ER to Golgi Anterograde Transport | ||||
Membrane Trafficking | ||||
Metabolism of proteins | ||||
Viral Interactions (0)
Gene Ontology Terms (8)
Functions (1)
Components (4)
Processes (3)
GO Term | Evidence | Assigned by | ||
---|---|---|---|---|
Inferred from Physical Interaction (IPI) | IntAct | |||
Disease Associations (null)
GWAS Traits (1)
Items per page:
1 – 1 of 1
GWAS Trait | EFO ID | Study Count | SNP Count | Beta Count | Odds Ratio | Evidence (Mean Rank Score) | Provenance | ||
---|---|---|---|---|---|---|---|---|---|
self reported educational attainment | 1 | 1 | 1 | 15.8 | |||||
Items per page:
1 – 1 of 1
GWAS Trait | EFO ID | Beta Count | Odds Ratio | Evidence (Mean Rank Score) | Provenance | ||
---|---|---|---|---|---|---|---|
self reported educational attainment | 1 | 15.8 | |||||
Find similar targets by:
IDG Resources
Orthologs (14)
1 – 5 of 14
Species | Name | Source ID | Gene ID | OMA | EggNOG | Inparanoid | ||
---|---|---|---|---|---|---|---|---|
Chimp | TRK-fused gene | 460557 | ||||||
Macaque | TRK-fused gene | 700972 | ||||||
Mouse | MGI:1338041 | 21787 | ||||||
Rat | RGD:1309751 | 360709 | ||||||
Dog | TRK-fused gene | VGNC:47299 | 487954 | |||||
Species | Name | OMA | EggNOG | Inparanoid | ||
---|---|---|---|---|---|---|
Chimp | TRK-fused gene | |||||
Macaque | TRK-fused gene | |||||
Mouse | ||||||
Rat | ||||||
Dog | TRK-fused gene | |||||
Publication Statistics
PubMed Score 66.74
PubMed score by year
PubTator Score 72.17
PubTator score by year
Related Publications
Text Mined References (42)
GeneRif Annotations (22)
Items per page:
0 of 0
PMID | Year | Title |
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