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Tclin
HDAC6
Histone deacetylase 6

Protein Summary
Description
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes (By similarity). Plays a central role in microtubule-dependent cell motility via deacetylation of tubulin. Involved in the MTA1-mediated epigenetic regulation of ESR1 expression in breast cancer. In addition to its protein deacetylase activity, plays a key role in the degradation of misfolded proteins: when misfolded proteins are too abundant to be degraded by the chaperone refolding system and the ubiquitin-proteasome, mediates the transport of misfolded proteins to a cytoplasmic juxtanuclear structure called aggresome. Probably acts as an adapter that recognizes polyubiquitinated misfolded proteins and target them to the aggres ...more
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000334136
  • ENSP00000334061
  • ENSG00000094631
  • ENST00000376619
  • ENSP00000365804
  • ENST00000426196
  • ENSP00000402189
  • ENST00000643374
  • ENSP00000496046
  • ENST00000644068
  • ENSP00000496013

Symbol
  • KIAA0901
  • HD6
  • JM21
  • CPBHM
  • PPP1R90
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
biological process
1
molecular function
1
histone modification site profile
0.9
interacting protein
0.89
hub protein
0.88


Related Tools
GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 961.57   (req: < 5)
Gene RIFs: 214   (req: <= 3)
Antibodies: 978   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 961.57   (req: >= 5)
Gene RIFs: 214   (req: > 3)
Antibodies: 978   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 68
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligands: 1525
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drugs: 4
Active Ligands (1525)
1 – 10 of 1525
CHEMBL3622533
chemical structure image
CHEMBL99
chemical structure image
CHEMBL598797
chemical structure image
CHEMBL1631916
chemical structure image
CHEMBL1631918
chemical structure image
CHEMBL1631915
chemical structure image
CHEMBL3670668
chemical structure image
CHEMBL408513
chemical structure image
CHEMBL251011
chemical structure image
CHEMBL1631917
chemical structure image
Orthologs (13)
1 – 5 of 13
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Macaque
histone deacetylase 6
711363
Mouse
MGI:1333752
15185
Rat
RGD:619981
84581
Rat
RGD:11442569
108348065
Dog
histone deacetylase 6
VGNC:50630
480907
Species
Name
OMA
EggNOG
Inparanoid
Macaque
histone deacetylase 6
Mouse
Rat
Rat
Dog
histone deacetylase 6
Protein Structure (17 Structures, 1 AlphaFold Model)
RepresentationColor Scheme

Click on a row in the table to change the structure displayed.
More information can be found at RCSB PDB

AF-Q9UBN7-F1-model_v1

AlphaFold Structures Developed by DeepMind and EMBL-EBI

1 – 5 of 17
PDB Structure Id
Ligand
Method
Resolution (Å)
Residues
Fraction of Total Protein
Pub Year
Title
PDB Structure Id
Fraction of Total Protein
Resolution
Pub Year
Pathways (39)
Cellular response to heat stress (R-HSA-3371556)

Click on a row in the table to change the structure displayed.

Items per page:
1 – 5 of 24
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Cellular response to heat stress
Reactome
Cellular responses to external stimuli
Reactome
Cellular responses to stress
Reactome
Cilium Assembly
Reactome
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
Name
Explore in Pharos
Explore in Source
Cellular response to heat stress
Cellular responses to external stimuli
Cellular responses to stress
Cilium Assembly
Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants
Gene Ontology Terms (85)
Items per page:
10
1 – 10 of 19
GO Term
Evidence
Assigned by
Inferred from Experiment (EXP)
Reactome
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
UniProtKB
Protein-Protein Interactions (356)
1 – 10 of 356
TUBA3C
Tchem
Novelty: 0.0187396
p_int: 0.99999557
p_ni: 0.00000443
Score: 0.174
Data Source: BioPlex,STRINGDB
NCOA1
Tchem
Family: Epigenetic
Novelty: 0.00344663
p_int: 0.999946969
p_ni: 0.000052888
p_wrong: 1.43e-7
Score: 0.21
Data Source: BioPlex,STRINGDB
LPIN3
Tbio
Family: Enzyme
Novelty: 0.01641336
p_int: 0.999903133
p_ni: 0.00009685
p_wrong: 1.7e-8
Score: 0.201
Data Source: BioPlex,STRINGDB
UBL7
Tdark
Novelty: 0.20935024
p_int: 0.999675342
p_ni: 0.000324148
p_wrong: 5.1e-7
Score: 0.613
Data Source: BioPlex,STRINGDB
TIMM50
Tbio
Family: Enzyme
Novelty: 0.0238053
p_int: 0.999500946
p_ni: 0.000499054
p_wrong: 1e-9
Score: 0.199
Data Source: BioPlex,STRINGDB
CHEK1
Tchem
Family: Kinase
Novelty: 0.00066843
p_int: 0.999452122
p_ni: 0.000547878
Score: 0.256
Data Source: BioPlex,STRINGDB
KCNAB3
Tbio
Family: IC
Novelty: 0.10128237
p_int: 0.999265822
p_ni: 0.000734176
p_wrong: 2e-9
Score: 0.267
Data Source: BioPlex,STRINGDB
NYAP2
Tdark
Family: Enzyme
Novelty: 1.08965558
p_int: 0.998392308
p_ni: 0.001606304
p_wrong: 0.000001388
Data Source: BioPlex
MCM7
Tbio
Novelty: 0.0017984
p_int: 0.998253088
p_ni: 0.001745688
p_wrong: 0.000001224
Score: 0.238
Data Source: BioPlex,STRINGDB
TULP2
Tdark
Family: TF
Novelty: 0.20144336
p_int: 0.998182874
p_ni: 0.001793295
p_wrong: 0.000023831
Score: 0.159
Data Source: BioPlex,STRINGDB
Publication Statistics
PubMed Score  961.57

PubMed score by year
PubTator Score  517.11

PubTator score by year
Amino Acid Sequence
Residue Counts
Protein Sequence
ProtVista Viewer
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