COL21A1
Collagen alpha-1(XXI) chain
Protein Summary
This gene encodes the alpha chain of type XXI collagen, a member of the FACIT (fibril-associated collagens with interrupted helices) collagen family. Type XXI collagen is localized to tissues containing type I collagen and maintains the integrity of the extracellular matrix. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2016]
- ENST00000244728
- ENSP00000244728
- ENSG00000124749
- ENST00000370819
- ENSP00000359855
- COL1AL
- FP633
- COLA1L
Most Knowledge About | Knowledge Value
(0 to 1 scale) | ||
|---|---|---|---|
virus perturbation | 0.79 | ||
tissue sample | 0.59 | ||
protein domain | 0.58 | ||
histone modification site profile | 0.54 | ||
cellular component | 0.52 | ||
Protein Classes
IDG Development Level Summary
These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:
Pubmed score: 5.12 (req: < 5)
Gene RIFs: 2 (req: <= 3)
Antibodies: 107 (req: <= 50)
These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:
Pubmed score: 5.12 (req: >= 5)
Gene RIFs: 2 (req: > 3)
Antibodies: 107 (req: > 50)
- OR - satisfy the following criterion:
Gene Ontology Terms: 2
Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions
Active Ligand: 0
Target has at least one approved drug - AND - satisfies the preceding conditions
Active Drug: 0
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Expression Data (0 Tissues)
Related Tools
TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
Active Ligands (0)
Protein-Protein Interactions (81)
Nearest Tclin Targets
Pathways (9)
Reactome (4)
KEGG (1)
WikiPathways (4)
Click on a row in the table to change the structure displayed.
Data Source | Name | Explore in Pharos | Explore in Source | ||
|---|---|---|---|---|---|
Reactome | Collagen biosynthesis and modifying enzymes | ||||
Reactome | Collagen chain trimerization | ||||
Reactome | Collagen formation | ||||
Reactome | Extracellular matrix organization | ||||
Name | Explore in Pharos | Explore in Source | ||
|---|---|---|---|---|
Collagen biosynthesis and modifying enzymes | ||||
Collagen chain trimerization | ||||
Collagen formation | ||||
Extracellular matrix organization | ||||
Viral Interactions (0)
Gene Ontology Terms (9)
Functions (1)
Components (7)
Processes (1)
GO Term | Evidence | Assigned by | ||
|---|---|---|---|---|
Inferred from High Throughput Direct Assay (HDA) | BHF-UCL | |||
Disease Associations ()
GWAS Traits (7)
Items per page:
1 – 5 of 7
GWAS Trait | EFO ID | Study Count | SNP Count | Beta Count | Odds Ratio | Evidence (Mean Rank Score) | Provenance | ||
|---|---|---|---|---|---|---|---|---|---|
heel bone mineral density | 2 | 3 | 4 | 93.1 | |||||
peak expiratory flow | 1 | 1 | 1 | 58.4 | |||||
forced expiratory volume | 1 | 1 | 1 | 56 | |||||
pulse pressure measurement | 2 | 2 | 2 | 42.2 | |||||
FEV/FEC ratio | 1 | 1 | 1 | 30.2 | |||||
Items per page:
1 – 5 of 7
GWAS Trait | EFO ID | Beta Count | Odds Ratio | Evidence (Mean Rank Score) | Provenance | ||
|---|---|---|---|---|---|---|---|
heel bone mineral density | 4 | 93.1 | |||||
peak expiratory flow | 1 | 58.4 | |||||
forced expiratory volume | 1 | 56 | |||||
pulse pressure measurement | 2 | 42.2 | |||||
FEV/FEC ratio | 1 | 30.2 | |||||
Find similar targets by:
IDG Resources
Orthologs (8)
1 – 5 of 8
Species | Name | Source ID | Gene ID | OMA | EggNOG | Inparanoid | ||
|---|---|---|---|---|---|---|---|---|
Chimp | collagen type XXI alpha 1 chain | VGNC:10696 | 462788 | |||||
Macaque | collagen type XXI alpha 1 chain | 712070 | ||||||
Dog | collagen type XXI alpha 1 chain | VGNC:39467 | 474945 | |||||
Horse | collagen type XXI alpha 1 chain | VGNC:16732 | 100056839 | |||||
Opossum | collagen type XXI alpha 1 chain | 100018467 | ||||||
Species | Name | OMA | EggNOG | Inparanoid | ||
|---|---|---|---|---|---|---|
Chimp | collagen type XXI alpha 1 chain | |||||
Macaque | collagen type XXI alpha 1 chain | |||||
Dog | collagen type XXI alpha 1 chain | |||||
Horse | collagen type XXI alpha 1 chain | |||||
Opossum | collagen type XXI alpha 1 chain | |||||
Publication Statistics
PubMed Score 5.12
PubMed score by year
PubTator Score 5.38
PubTator score by year
Related Publications
Text Mined References (16)
GeneRif Annotations (2)
Items per page:
0 of 0
PMID | Year | Title |
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