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Tdark
TRAPPC5
Trafficking protein particle complex subunit 5

Protein Summary
Description
May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000317378
  • ENSP00000316990
  • ENSG00000181029
  • ENST00000426877
  • ENSP00000399025
  • ENST00000596148
  • ENSP00000470262

Symbol
  • TRS31
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
cell type or tissue
0.86
transcription factor binding site profile
0.86
histone modification site profile
0.82
transcription factor
0.79
interacting protein
0.72


Related Tools
GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 2.22   (req: < 5)
Gene RIFs: 0   (req: <= 3)
Antibodies: 86   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 2.22   (req: >= 5)
Gene RIFs: 0   (req: > 3)
Antibodies: 86   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 3
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligand: 0
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
Orthologs (12)
1 – 5 of 12
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
trafficking protein particle complex 5
VGNC:2215
468697
Mouse
MGI:1913932
66682
Rat
RGD:1563971
363858
Dog
trafficking protein particle complex 5
VGNC:47784
484997
Cow
trafficking protein particle complex 5
VGNC:36291
504874
Species
Name
OMA
EggNOG
Inparanoid
Chimp
trafficking protein particle complex 5
Mouse
Rat
Dog
trafficking protein particle complex 5
Cow
trafficking protein particle complex 5
Protein Structure (0 Structures, 1 AlphaFold Model)
RepresentationColor Scheme
AF-Q8IUR0-F1-model_v1

AlphaFold Structures Developed by DeepMind and EMBL-EBI

Pathways (10)
Asparagine N-linked glycosylation (R-HSA-446203)

Click on a row in the table to change the structure displayed.

Items per page:
1 – 5 of 10
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Asparagine N-linked glycosylation
Reactome
COPII-mediated vesicle transport
Reactome
ER to Golgi Anterograde Transport
Reactome
Membrane Trafficking
Reactome
Metabolism of proteins
Name
Explore in Pharos
Explore in Source
Asparagine N-linked glycosylation
COPII-mediated vesicle transport
ER to Golgi Anterograde Transport
Membrane Trafficking
Metabolism of proteins
Gene Ontology Terms (10)
Items per page:
10
1 – 1 of 1
GO Term
Evidence
Assigned by
Traceable Author Statement (TAS)
Reactome
Protein-Protein Interactions (132)
1 – 10 of 132
TRAPPC1
Tbio
Novelty: 0.09781468
p_int: 1
Score: 0.999
Data Source: BioPlex,STRINGDB
TRAPPC2
Tbio
Novelty: 0.02016231
p_int: 1
Score: 0.999
Data Source: BioPlex,STRINGDB
TRAPPC12
Tbio
Novelty: 0.09847363
p_int: 1
Score: 0.994
Data Source: BioPlex,STRINGDB
TRAPPC2L
Tdark
Novelty: 0.41040339
p_int: 0.999999935
p_ni: 6.5e-8
Score: 0.995
Data Source: BioPlex,STRINGDB
TRAPPC11
Tbio
Novelty: 0.05737444
p_int: 0.999999928
p_ni: 7.2e-8
Score: 0.995
Data Source: BioPlex,STRINGDB
TRAPPC13
Tdark
Novelty: 0.4415
p_int: 0.999999921
p_ni: 7e-8
p_wrong: 9e-9
Score: 0.993
Data Source: BioPlex,STRINGDB
TRAPPC6A
Tbio
Novelty: 0.09865129
p_int: 0.999999813
p_ni: 1.87e-7
p_wrong: 1e-9
Score: 0.999
Data Source: BioPlex,STRINGDB
TRAPPC6B
Tbio
Novelty: 0.15086531
p_int: 0.999999763
p_ni: 2.37e-7
Score: 0.998
Data Source: BioPlex,STRINGDB
C7orf43
Tdark
Novelty: 1.11975505
p_int: 0.999999618
p_ni: 3.81e-7
Score: 0.811
Data Source: BioPlex,STRINGDB
TRAPPC4
Tbio
Novelty: 0.05749912
p_int: 0.999999322
p_ni: 6.78e-7
Score: 0.999
Data Source: BioPlex,STRINGDB
Publication Statistics
PubMed Score  2.22

PubMed score by year
PubTator Score  0.2

PubTator score by year
Amino Acid Sequence
Residue Counts
Protein Sequence
ProtVista Viewer