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Tbio
SMG6
Telomerase-binding protein EST1A

Protein Summary
Description
Component of the telomerase ribonucleoprotein (RNP) complex that is essential for the replication of chromosome termini (PubMed:19179534). May have a general role in telomere regulation (PubMed:12676087, PubMed:12699629). Promotes in vitro the ability of TERT to elongate telomeres (PubMed:12676087, PubMed:12699629). Overexpression induces telomere uncapping, chromosomal end-to-end fusions (telomeric DNA persists at the fusion points) and did not perturb TRF2 telomeric localization (PubMed:12676087, PubMed:12699629). Binds to the single-stranded 5'-(GTGTGG)(4)GTGT-3' telomeric DNA, but not to a telomerase RNA template component (TER) (PubMed:12676087, PubMed:12699629). Plays a role in nonsense-mediated mRNA decay (PubMed:18974281, PubMed:19060897, PubMed:20930030, PubMed:17053788). Is thought to provide a link to the mRNA degradation machinery as it has endonuclease activity required to initiate NMD, and to serve as an adapter for UPF1 to protein phosphatase 2A (PP2A), thereby triggerin ...more
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000263073
  • ENSP00000263073
  • ENSG00000070366
  • ENST00000354901
  • ENSP00000346977
  • ENST00000536871
  • ENSP00000440283

Symbol
  • C17orf31
  • EST1A
  • KIAA0732
  • EST1A
  • SMG-6
  • C17orf31
  • hSMG5/7a
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
cellular component
0.81
histone modification site profile
0.81
protein domain
0.73
transcription factor binding site profile
0.72
drug perturbation
0.71


Protein Classes
No PANTHER Classes or DTO Classes found
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 48.12   (req: < 5)
Gene RIFs: 16   (req: <= 3)
Antibodies: 65   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 48.12   (req: >= 5)
Gene RIFs: 16   (req: > 3)
Antibodies: 65   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 17
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligand: 0
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
Expression Data (0 Tissues)
No expression data found
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Related Tools (4)
Target Illumination GWAS Analytics (TIGA)
Thumbnail image for Target Illumination GWAS Analytics (TIGA)
TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.
GENEVA
Thumbnail image for GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
Thumbnail image for GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
Thumbnail image for ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
No approved drugs found
Active Ligands (0)
No active ligands found
Protein-Protein Interactions (217)
C2orf68
Tdark
Novelty:  0.7947239
p_int:  0.999999947
p_ni:  5.3e-8
Score:  0.241
Data Source:  BioPlex,STRINGDB
FAM221B
Tdark
Novelty:  71
p_int:  0.999996443
p_ni:  0.000003557
Score:  0.214
Data Source:  BioPlex,STRINGDB
SPATA1
Tdark
p_int:  0.999996177
p_ni:  0.000003823
Data Source:  BioPlex
HAO2
Tchem
Family:  Enzyme
Novelty:  0.03029536
p_int:  0.999993395
p_ni:  0.000006598
p_wrong:  7e-9
Score:  0.173
Data Source:  BioPlex,STRINGDB
LPIN3
Tbio
Family:  Enzyme
Novelty:  0.01641336
p_int:  0.998139935
p_ni:  0.001860063
p_wrong:  2e-9
Score:  0.245
Data Source:  BioPlex,STRINGDB
CSNK2B
Tbio
Family:  Kinase
Novelty:  0.00152367
p_int:  0.994595129
p_ni:  0.005404869
p_wrong:  2e-9
Data Source:  BioPlex
PSG1
Tbio
Novelty:  0.0239046
p_int:  0.969157313
p_ni:  0.030823747
p_wrong:  0.00001894
Score:  0.196
Data Source:  BioPlex,STRINGDB
UPF1
Tbio
Novelty:  0.00311006
Score:  0.998
Data Source:  STRINGDB
UPF2
Tbio
Novelty:  0.01064562
Score:  0.995
Data Source:  STRINGDB
UPF3B
Tbio
Novelty:  0.03482348
Score:  0.994
Data Source:  STRINGDB
Nearest Tclin Targets
Nearest Tclin calculations are only available for targets with KEGG Pathway annotations.
Pathways (5)
Metabolism of RNA (R-HSA-8953854)

Click on a row in the table to change the structure displayed.

Find Similar Targets
Items per page:
1 – 3 of 3
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Metabolism of RNA
Reactome
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Reactome
Nonsense-Mediated Decay (NMD)
Name
Explore in Pharos
Explore in Source
Metabolism of RNA
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)
Nonsense-Mediated Decay (NMD)
Viral Interactions (0)
No viral interactions found
Gene Ontology Terms (23)
Find Similar Targets
Items per page:
10
1 – 8 of 8
GO Term
Evidence
Assigned by
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
HGNC
Inferred from Physical Interaction (IPI)
BHF-UCL
Inferred from Physical Interaction (IPI)
BHF-UCL
Inferred from Physical Interaction (IPI)
BHF-UCL
Inferred from Physical Interaction (IPI)
BHF-UCL
Inferred from Biological aspect of Ancestor (IBA)
GO_Central
Inferred from Electronic Annotation (IEA)
UniProtKB-KW
Disease Associations (null)
No disease associations found
GWAS Traits (71)
GWAS Trait
EFO ID
Study Count
SNP Count
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
heel bone mineral density
3
7
10
98.1
5
6
3
1.1
96.6
femoral neck bone mineral density
2
2
2
92.9
body mass index
5
3
5
91.2
platelet count
3
5
5
88
GWAS Trait
EFO ID
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
heel bone mineral density
10
98.1
3
1.1
96.6
femoral neck bone mineral density
2
92.9
body mass index
5
91.2
platelet count
5
88
Find similar targets by:
IDG Resources
No IDG generated resources found
Orthologs (11)
1 – 5 of 11
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
SMG6, nonsense mediated mRNA decay factor
VGNC:9636
454417
Mouse
MGI:2144117
103677
Rat
RGD:1595918
287522
Dog
SMG6, nonsense mediated mRNA decay factor
VGNC:46556
491199
Horse
SMG6, nonsense mediated mRNA decay factor
VGNC:23339
100060172
Species
Name
OMA
EggNOG
Inparanoid
Chimp
SMG6, nonsense mediated mRNA decay factor
Mouse
Rat
Dog
SMG6, nonsense mediated mRNA decay factor
Horse
SMG6, nonsense mediated mRNA decay factor
Publication Statistics
PubMed Score 48.12
PubMed score by year
PubTator Score 26.86
PubTator score by year
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Related Publications
Items per page:
0 of 0
PMID
Year
Title