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Tchem
PBRM1
Protein polybromo-1

Protein Summary
Description
Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for the stability of the SWI/SNF chromatin remodeling complex SWI/SNF-B (PBAF). Acts as a negative regulator of cell proliferation. This locus encodes a subunit of ATP-dependent chromatin-remodeling complexes. The encoded protein has been identified as in integral component of complexes necessary for ligand-dependent transcriptional activation by nuclear hormone receptors. Mutations at this locus have been associated with primary clear cell renal cell carcinoma. [provided by RefSeq, Feb 2012]
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000296302
  • ENSP00000296302
  • ENSG00000163939
  • ENST00000337303
  • ENSP00000338302
  • ENST00000356770
  • ENSP00000349213
  • ENST00000394830
  • ENSP00000378307
  • ENST00000409057
  • ENSP00000386593
  • ENST00000409114
  • ENSP00000386643
  • ENST00000409767
  • ENSP00000386601
  • ENST00000410007
  • ENSP00000386529
  • ENST00000412587
  • ENSP00000404579

Symbol
  • BAF180
  • PB1
  • PB1
  • BAF180
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
interacting protein
0.88
virus perturbation
0.88
kinase perturbation
0.81
microRNA
0.76
transcription factor
0.76


IDG Partner Tools
GlyGen
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 177.09   (req: < 5)
View Publications
Gene RIFs: 55   (req: <= 3)
View Gene RIFs
Antibodies: 152   (req: <= 50)
View Antibodies
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 177.09   (req: >= 5)
Gene RIFs: 55   (req: > 3)
Antibodies: 152   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 8
View GO Terms
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligands: 9
Explore Active Ligands
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
GWAS Traits (18)
Items per page:
1 – 5 of 18
GWAS Trait
EFO ID
Study Count
SNP Count
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
BMI-adjusted waist-hip ratio
EFO_0007788
5
3
12
98.9
schizophrenia
EFO_0000692
3
1
0
1.1
88.1
red blood cell distribution width
EFO_0005192
2
2
2
83.1
red blood cell density measurement
EFO_0007978
1
1
1
74.2
adiponectin measurement
EFO_0004502
1
1
1
73
Items per page:
1 – 5 of 18
GWAS Trait
EFO ID
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
BMI-adjusted waist-hip ratio
EFO_0007788
12
98.9
schizophrenia
EFO_0000692
0
1.1
88.1
red blood cell distribution width
EFO_0005192
2
83.1
red blood cell density measurement
EFO_0007978
1
74.2
adiponectin measurement
EFO_0004502
1
73
Protein Data Bank (22)
1 – 5 of 22
PDB Structure Id
Ligand
Method
Resolution (Å)
M.W. (kDa)
Pub Year
Title
PDB Structure Id
M.W.
Resolution
Pub Year
Pathways (10)
Chromatin modifying enzymes (R-HSA-3247509)

Click on a row in the table to change the structure displayed.

Items per page:
1 – 5 of 8
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Chromatin modifying enzymes
238 targets
R-HSA-3247509
Reactome
Chromatin organization
238 targets
R-HSA-4839726
Reactome
Gene expression (Transcription)
1452 targets
R-HSA-74160
Reactome
Generic Transcription Pathway
1195 targets
R-HSA-212436
Reactome
RMTs methylate histone arginines
49 targets
R-HSA-3214858
Name
Explore in Pharos
Explore in Source
Chromatin modifying enzymes
238 targets
R-HSA-3247509
Chromatin organization
238 targets
R-HSA-4839726
Gene expression (Transcription)
1452 targets
R-HSA-74160
Generic Transcription Pathway
1195 targets
R-HSA-212436
RMTs methylate histone arginines
49 targets
R-HSA-3214858
Gene Ontology Terms (11)
Items per page:
10
1 – 2 of 2
GO Term
Evidence
Assigned by
chromatin binding
Inferred from Biological aspect of Ancestor (IBA)
GO_Central
DNA binding
Inferred from Electronic Annotation (IEA)
UniProtKB-KW
Protein-Protein Interactions (150)
1 – 10 of 150
BCL7C
Tdark
Novelty: 0.31203802
p_int: 0.999998684
p_ni: 0.000001316
Score: 0.832
Data Source: BioPlex,STRINGDB
SMARCC2
Tbio
Family: TF; Epigenetic
Novelty: 0.02625321
p_int: 0.999998385
p_ni: 0.000001615
Score: 0.999
Data Source: BioPlex,STRINGDB
SMARCB1
Tbio
Novelty: 0.00116387
p_int: 0.999998322
p_ni: 0.000001678
Score: 0.995
Data Source: BioPlex,STRINGDB
BCL7A
Tbio
Novelty: 0.07026394
p_int: 0.999980854
p_ni: 0.000019146
Score: 0.808
Data Source: BioPlex,STRINGDB
DPF3
Tbio
Family: Epigenetic
Novelty: 0.069151
p_int: 0.999965334
p_ni: 0.000034666
Score: 0.987
Data Source: BioPlex,STRINGDB
SMARCE1
Tbio
Family: TF
Novelty: 0.01748089
p_int: 0.999926179
p_ni: 0.000073821
Score: 0.995
Data Source: BioPlex,STRINGDB
NUP50
Tbio
Novelty: 0.03424725
p_int: 0.999910299
p_ni: 0.000089701
Score: 0.632
Data Source: BioPlex,STRINGDB
SMARCD1
Tbio
Novelty: 0.03176642
p_int: 0.999866448
p_ni: 0.000133551
p_wrong: 1e-9
Score: 0.996
Data Source: BioPlex,STRINGDB
RPL37
Tbio
Novelty: 0.03935854
p_int: 0.992390059
p_ni: 0.007609941
Data Source: BioPlex
RPL11
Tbio
Novelty: 0.00448962
p_int: 0.944417554
p_ni: 0.055582446
Data Source: BioPlex
Publication Statistics
PubMed Score  177.09

PubMed score by year
PubTator Score  483.58

PubTator score by year
Amino Acid Sequence
Residue Counts
Protein Sequence
ProtVista Viewer
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