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Tchem
LRRK2
Leucine-rich repeat serine/threonine-protein kinase 2

Protein Summary
Description
Positively regulates autophagy through a calcium-dependent activation of the CaMKK/AMPK signaling pathway. The process involves activation of nicotinic acid adenine dinucleotide phosphate (NAADP) receptors, increase in lysosomal pH, and calcium release from lysosomes. Together with RAB29, plays a role in the retrograde trafficking pathway for recycling proteins, such as mannose 6 phosphate receptor (M6PR), between lysosomes and the Golgi apparatus in a retromer-dependent manner. Regulates neuronal process morphology in the intact central nervous system (CNS). Plays a role in synaptic vesicle trafficking. Phosphorylates PRDX3. Has GTPase activity. May play a role in the phosphorylation of proteins central to Parkinson disease. Plays an important role in recuiting SEC16A to endoplasmic reticulum exit sites (ERES) and in regulating ER to Golgi vesicle-mediated transport and ERES organization (PubMed:25201882). This gene is a member of the leucine-rich repeat kinase family and encodes a pr ...more
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000298910
  • ENSP00000298910
  • ENSG00000188906

Symbol
  • PARK8
  • PARK8
  • RIPK7
  • ROCO2
  • AURA17
  • DARDARIN
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
biological process
1
molecular function
1
protein domain
1
cellular component
0.93
drug perturbation
0.87


IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 1393.61   (req: < 5)
Gene RIFs: 741   (req: <= 3)
Antibodies: 804   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 1393.61   (req: >= 5)
Gene RIFs: 741   (req: > 3)
Antibodies: 804   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 118
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligands: 859
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 1
Approved Drugs (1)
1 – 1 of 1
sunitinib
chemical structure image
Protein Data Bank (4)
1 – 4 of 4
PDB Structure Id
Ligand
Method
Resolution (Å)
M.W. (kDa)
Pub Year
Title
PDB Structure Id
M.W.
Resolution
Pub Year
Pathways (9)
PTK6 promotes HIF1A stabilization (R-HSA-8857538)

Click on a row in the table to change the structure displayed.

Items per page:
1 – 4 of 4
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
PTK6 promotes HIF1A stabilization
Reactome
Signal Transduction
Reactome
Signaling by Non-Receptor Tyrosine Kinases
Reactome
Signaling by PTK6
Name
Explore in Pharos
Explore in Source
PTK6 promotes HIF1A stabilization
Signal Transduction
Signaling by Non-Receptor Tyrosine Kinases
Signaling by PTK6
Gene Ontology Terms (161)
Items per page:
10
1 – 10 of 24
GO Term
Evidence
Assigned by
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
BHF-UCL
Inferred from Direct Assay (IDA)
ParkinsonsUK-UCL
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
BHF-UCL
Protein-Protein Interactions (445)
1 – 10 of 445
PRKN
Tbio
Family: Enzyme
Novelty: 0.00092228
Score: 0.978
Data Source: STRINGDB
SNCA
Tchem
Novelty: 0.00021357
Score: 0.971
Data Source: STRINGDB
PINK1
Tbio
Family: Kinase
Novelty: 0.00128084
Score: 0.966
Data Source: STRINGDB
PARK7
Tbio
Family: Enzyme
Novelty: 0.00119335
Score: 0.958
Data Source: STRINGDB
SFN
Tbio
Novelty: 0.00262427
Score: 0.955
Data Source: STRINGDB
HIF1A
Tchem
Family: TF
Novelty: 0.00031917
Score: 0.941
Data Source: Reactome,STRINGDB
VPS35
Tbio
Novelty: 0.0090644
Score: 0.941
Data Source: STRINGDB
GPNMB
Tbio
Novelty: 0.0073534
Score: 0.936
Data Source: Reactome,STRINGDB
RAB29
Tchem
Family: Enzyme
Novelty: 0.06535163
Score: 0.93
Data Source: STRINGDB
EGFR
Tclin
Family: Kinase
Novelty: 0.0000974
Score: 0.921
Data Source: Reactome,STRINGDB
Publication Statistics
PubMed Score  1393.61

PubMed score by year
PubTator Score  1206.16

PubTator score by year
Patents
Amino Acid Sequence
Residue Counts
Protein Sequence
ProtVista Viewer
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