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Tchem
MMP13
Collagenase 3

Protein Summary
Description
Plays a role in the degradation of extracellular matrix proteins including fibrillar collagen, fibronectin, TNC and ACAN. Cleaves triple helical collagens, including type I, type II and type III collagen, but has the highest activity with soluble type II collagen. Can also degrade collagen type IV, type XIV and type X. May also function by activating or degrading key regulatory proteins, such as TGFB1 and CTGF. Plays a role in wound healing, tissue remodeling, cartilage degradation, bone development, bone mineralization and ossification. Required for normal embryonic bone development and ossification. Plays a role in the healing of bone fractures via endochondral ossification. Plays a role in wound healing, probably by a mechanism that involves proteolytic activation of TGFB1 and degradation of CTGF. Plays a role in keratinocyte migration during wound healing. May play a role in cell migration and in tumor cell invasion. This gene encodes a member of the peptidase M10 family of matrix ...more
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000260302
  • ENSP00000260302
  • ENSG00000137745

Symbol
  • CLG3
  • MDST
  • MANDP1
  • MMP-13
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
protein domain
1
biological term
0.98
gene perturbation
0.85
chemical
0.82
disease
0.76


Related Tools
Target Illumination GWAS Analytics (TIGA)
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TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.
GENEVA
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GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
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GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 1748.44   (req: < 5)
Gene RIFs: 259   (req: <= 3)
Antibodies: 971   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 1748.44   (req: >= 5)
Gene RIFs: 259   (req: > 3)
Antibodies: 971   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 13
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligands: 2170
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
GWAS Traits (8)
GWAS Trait
EFO ID
Study Count
SNP Count
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
matrix metalloproteinase 12 measurement
1
4
4
98.2
matrix metalloproteinase measurement
1
2
2
89.7
blood protein measurement
1
1
1
87.9
emphysema pattern measurement
1
2
3
45.6
matrix metalloproteinase 1 measurement
1
1
1
32.7
GWAS Trait
EFO ID
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
matrix metalloproteinase 12 measurement
4
98.2
matrix metalloproteinase measurement
2
89.7
blood protein measurement
1
87.9
emphysema pattern measurement
3
45.6
matrix metalloproteinase 1 measurement
1
32.7
Orthologs (14)
1 – 5 of 14
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
matrix metallopeptidase 13
VGNC:1095
451513
Macaque
matrix metallopeptidase 13
703980
Mouse
MGI:1340026
17386
Rat
RGD:620196
171052
Dog
matrix metallopeptidase 13
VGNC:43276
403763
Species
Name
OMA
EggNOG
Inparanoid
Chimp
matrix metallopeptidase 13
Macaque
matrix metallopeptidase 13
Mouse
Rat
Dog
matrix metallopeptidase 13
Protein Structure (48 Structures, 1 AlphaFold Model)
RepresentationColor Scheme

Click on a row in the table to change the structure displayed.
More information can be found at RCSB PDB

AF-P45452-F1-model_v1

AlphaFold Structures Developed by DeepMind and EMBL-EBI

1 – 5 of 48
PDB Structure Id
Ligand
Method
Resolution (Å)
Residues
Fraction of Total Protein
Pub Year
Title
PDB Structure Id
Fraction of Total Protein
Resolution
Pub Year
Pathways (68)
Activation of Matrix Metalloproteinases (R-HSA-1592389)

Click on a row in the table to change the structure displayed.

Items per page:
1 – 5 of 11
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Activation of Matrix Metalloproteinases
Reactome
Assembly of collagen fibrils and other multimeric structures
Reactome
Collagen degradation
Reactome
Collagen formation
Reactome
Degradation of the extracellular matrix
Name
Explore in Pharos
Explore in Source
Activation of Matrix Metalloproteinases
Assembly of collagen fibrils and other multimeric structures
Collagen degradation
Collagen formation
Degradation of the extracellular matrix
Protein-Protein Interactions (199)
1 – 10 of 199
MYCBP2
Tbio
Family:  Enzyme
Novelty:  0.00413684
p_int:  0.999985544
p_ni:  0.000014456
Data Source:  BioPlex
FBXO45
Tbio
Novelty:  0.05784607
p_int:  0.999706516
p_ni:  0.000283778
p_wrong:  0.000009706
Data Source:  BioPlex
PEAK1
Tchem
Family:  Kinase
Novelty:  0.02919858
p_int:  0.997177393
p_ni:  0.002822606
p_wrong:  1e-9
Data Source:  BioPlex
SPRYD3
Tdark
Novelty:  3.99875244
p_int:  0.991992985
p_ni:  0.000021102
p_wrong:  0.007985913
Data Source:  BioPlex
HTRA2
Tbio
Family:  Enzyme
Novelty:  0.00343249
p_int:  0.991298641
p_ni:  0.008701359
Data Source:  BioPlex
GID4
Tbio
Novelty:  0.05252674
p_int:  0.983636686
p_ni:  0.016363314
Data Source:  BioPlex
ARMC8
Tbio
Novelty:  0.06820746
p_int:  0.982847074
p_ni:  0.017152926
Data Source:  BioPlex
WDR26
Tbio
Novelty:  0.04140166
p_int:  0.982235842
p_ni:  0.017764159
Data Source:  BioPlex
ADAMTS2
Tbio
Family:  Enzyme
Novelty:  0.00852208
p_int:  0.945194648
p_ni:  0.054542912
p_wrong:  0.00026244
Score:  0.362
Data Source:  BioPlex,STRINGDB
MKLN1
Tbio
Novelty:  0.05014385
p_int:  0.944621862
p_ni:  0.055378138
Data Source:  BioPlex
Publication Statistics
PubMed Score  1748.44

PubMed score by year
PubTator Score  1057.39

PubTator score by year
Amino Acid Sequence
Residue Counts
Protein Sequence
ProtVista Viewer
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