You are using an outdated browser. Please upgrade your browser to improve your experience.

Tclin
TOP1
DNA topoisomerase 1

Protein Summary
Description
Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then rotates around the intact phosphodiester bond on the opposing strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 5'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone (By similarity). Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells. Involved in the circadian transcription of the core circadian clock component ARNTL/BMAL1 by altering the chromatin structure around the ROR resp ...more
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
hub protein
1
interacting protein
1
protein domain
1
transcription factor perturbation
0.96
molecular function
0.95


Related Tools
Target Illumination GWAS Analytics (TIGA)
TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.
GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 4950   (req: < 5)
Gene RIFs: 180   (req: <= 3)
Antibodies: 382   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 4950   (req: >= 5)
Gene RIFs: 180   (req: > 3)
Antibodies: 382   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 23
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligands: 139
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drugs: 4
GWAS Traits (8)
GWAS Trait
EFO ID
Study Count
SNP Count
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
low density lipoprotein cholesterol measurement
3
2
5
93.7
total cholesterol measurement
2
1
3
79.5
BMI-adjusted waist-hip ratio
1
1
1
78.7
waist-hip ratio
1
1
1
69.6
hemoglobin measurement
2
1
2
66.9
GWAS Trait
EFO ID
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
low density lipoprotein cholesterol measurement
5
93.7
total cholesterol measurement
3
79.5
BMI-adjusted waist-hip ratio
1
78.7
waist-hip ratio
1
69.6
hemoglobin measurement
2
66.9
Orthologs (16)
1 – 5 of 16
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
DNA topoisomerase I
VGNC:10014
458252
Macaque
DNA topoisomerase I
697300
Mouse
MGI:98788
21969
Rat
RGD:621246
64550
Dog
DNA topoisomerase I
VGNC:49631
477229
Species
Name
OMA
EggNOG
Inparanoid
Chimp
DNA topoisomerase I
Macaque
DNA topoisomerase I
Mouse
Rat
Dog
DNA topoisomerase I
Protein Structure (15 Structures, 1 AlphaFold Model)
RepresentationColor Scheme

Click on a row in the table to change the structure displayed.
More information can be found at RCSB PDB

AF-P11387-F1-model_v1

AlphaFold Structures Developed by DeepMind and EMBL-EBI

1 – 5 of 15
PDB Structure Id
Ligand
Method
Resolution (Å)
Residues
Fraction of Total Protein
Pub Year
Title
PDB Structure Id
Fraction of Total Protein
Resolution
Pub Year
Pathways (10)
Metabolism of proteins (R-HSA-392499)

Click on a row in the table to change the structure displayed.

Items per page:
1 – 5 of 5
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Metabolism of proteins
Reactome
Post-translational protein modification
Reactome
SUMO E3 ligases SUMOylate target proteins
Reactome
SUMOylation
Reactome
SUMOylation of DNA replication proteins
Name
Explore in Pharos
Explore in Source
Metabolism of proteins
Post-translational protein modification
SUMO E3 ligases SUMOylate target proteins
SUMOylation
SUMOylation of DNA replication proteins
Gene Ontology Terms (32)
Items per page:
10
1 – 10 of 11
GO Term
Evidence
Assigned by
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Physical Interaction (IPI)
CAFA
Inferred from Mutant Phenotype (IMP)
CAFA
Inferred from Mutant Phenotype (IMP)
CAFA
Inferred from Mutant Phenotype (IMP)
CAFA
Inferred from Mutant Phenotype (IMP)
CAFA
Inferred from Mutant Phenotype (IMP)
CAFA
Protein-Protein Interactions (286)
1 – 10 of 286
EAF1
Tbio
Novelty: 0.81120425
p_int: 0.99560056
p_ni: 0.00439944
Data Source: BioPlex
ZRANB2
Tbio
Novelty: 0.06105086
p_int: 0.992838763
p_ni: 0.007161237
Score: 0.556
Data Source: BioPlex,STRINGDB
ESAM
Tbio
Novelty: 0.00462452
p_int: 0.952336066
p_ni: 0.047663934
Score: 0.19
Data Source: BioPlex,STRINGDB
CIDEC
Tbio
Novelty: 0.01081754
p_int: 0.910968099
p_ni: 0.089031901
Score: 0.252
Data Source: BioPlex,STRINGDB
HDGFL2
Tbio
Family: Epigenetic
Novelty: 0.11846257
p_int: 0.901074525
p_ni: 0.098925475
Data Source: BioPlex
SNRPGP15
Tdark
p_int: 0.89344272
p_ni: 0.10655728
Data Source: BioPlex
PRICKLE3
Tbio
Novelty: 0.26347141
p_int: 0.882610129
p_ni: 0.117389871
Data Source: BioPlex
DUS4L
Tbio
Family: Enzyme
Novelty: 0.05943255
p_int: 0.860040648
p_ni: 0.139959352
Score: 0.209
Data Source: BioPlex,STRINGDB
GTF2E2
Tbio
Novelty: 0.18033153
p_int: 0.809584398
p_ni: 0.190415602
Score: 0.219
Data Source: BioPlex,STRINGDB
TOP2A
Tclin
Family: Enzyme
Novelty: 0.00122788
Score: 0.997
Data Source: STRINGDB
Publication Statistics
PubMed Score  4950.00

PubMed score by year
PubTator Score  69.41

PubTator score by year
Amino Acid Sequence
Residue Counts
Protein Sequence
ProtVista Viewer
Find similar targets by: