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Tbio
COL3A1
Collagen alpha-1(III) chain

Protein Summary
Description
Collagen type III occurs in most soft connective tissues along with type I collagen. Involved in regulation of cortical development. Is the major ligand of ADGRG1 in the developing brain and binding to ADGRG1 inhibits neuronal migration and activates the RhoA pathway by coupling ADGRG1 to GNA13 and possibly GNA12. This gene encodes the pro-alpha1 chains of type III collagen, a fibrillar collagen that is found in extensible connective tissues such as skin, lung, uterus, intestine and the vascular system, frequently in association with type I collagen. Mutations in this gene are associated with Ehlers-Danlos syndrome types IV, and with aortic and arterial aneurysms. Two transcripts, resulting from the use of alternate polyadenylation signals, have been identified for this gene. [provided by R. Dalgleish, Feb 2008]
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
biological process
0.92
small molecule perturbation
0.87
biological term
0.86
disease
0.86
gene perturbation
0.84


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GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 470.71   (req: < 5)
Gene RIFs: 123   (req: <= 3)
Antibodies: 696   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 470.71   (req: >= 5)
Gene RIFs: 123   (req: > 3)
Antibodies: 696   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 30
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligand: 0
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
Orthologs (9)
1 – 5 of 9
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Macaque
collagen type III alpha 1 chain
574131
Mouse
MGI:88453
12825
Rat
RGD:71029
84032
Dog
collagen type III alpha 1 chain
VGNC:39472
478835
Cow
collagen type III alpha 1 chain
VGNC:27565
510833
Species
Name
OMA
EggNOG
Inparanoid
Macaque
collagen type III alpha 1 chain
Mouse
Rat
Dog
collagen type III alpha 1 chain
Cow
collagen type III alpha 1 chain
Protein Data Bank (8)
1 – 5 of 8
PDB Structure Id
Ligand
Method
Resolution (Å)
M.W. (kDa)
Pub Year
Title
PDB Structure Id
M.W.
Resolution
Pub Year
Pathways (28)
Assembly of collagen fibrils and other multimeric structures (R-HSA-2022090)

Click on a row in the table to change the structure displayed.

Items per page:
1 – 5 of 8
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Assembly of collagen fibrils and other multimeric structures
Reactome
Binding and Uptake of Ligands by Scavenger Receptors
Reactome
Collagen biosynthesis and modifying enzymes
Reactome
Collagen chain trimerization
Reactome
Collagen formation
Name
Explore in Pharos
Explore in Source
Assembly of collagen fibrils and other multimeric structures
Binding and Uptake of Ligands by Scavenger Receptors
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization
Collagen formation
Gene Ontology Terms (36)
Items per page:
10
1 – 7 of 7
GO Term
Evidence
Assigned by
Inferred from Direct Assay (IDA)
MGI
Inferred from Physical Interaction (IPI)
CAFA
Inferred from Mutant Phenotype (IMP)
UniProtKB
Inferred from Mutant Phenotype (IMP)
UniProtKB
Inferred from High Throughput Direct Assay (HDA)
BHF-UCL
Inferred from Electronic Annotation (IEA)
UniProtKB-KW
Inferred from Electronic Annotation (IEA)
Ensembl
Protein-Protein Interactions (211)
1 – 10 of 211
LAIR2
Tbio
Novelty: 0.06117644
p_int: 0.999999927
p_ni: 7.3e-8
Data Source: BioPlex
ERAL1
Tbio
Family: Enzyme
Novelty: 0.01695998
p_int: 0.752029338
p_ni: 0.00000333
p_wrong: 0.247967332
Score: 0.513
Data Source: BioPlex,STRINGDB
COL1A2
Tbio
Novelty: 0.00048334
Score: 0.995
Data Source: STRINGDB
COL1A1
Tbio
Novelty: 0.00063584
Score: 0.994
Data Source: STRINGDB
COL5A2
Tbio
Novelty: 0.01352973
Score: 0.993
Data Source: STRINGDB
COL6A1
Tbio
Novelty: 0.00644855
Score: 0.991
Data Source: STRINGDB
COL6A3
Tbio
Novelty: 0.00805254
Score: 0.985
Data Source: STRINGDB
LUM
Tbio
Novelty: 0.00219939
Score: 0.978
Data Source: STRINGDB
PCOLCE
Tbio
Family: Enzyme
Novelty: 0.02012457
Score: 0.978
Data Source: STRINGDB
COL6A2
Tbio
Novelty: 0.01275082
Score: 0.969
Data Source: STRINGDB
Publication Statistics
PubMed Score  470.71

PubMed score by year
PubTator Score  304.18

PubTator score by year
Amino Acid Sequence
Residue Counts
Protein Sequence
ProtVista Viewer
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