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Tbio
NUDT21
Cleavage and polyadenylation specificity factor subunit 5

Protein Summary
Description
Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs (PubMed:9659921, PubMed:8626397, PubMed:14690600, PubMed:15937220, PubMed:17024186, PubMed:17098938, PubMed:29276085). CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals) (PubMed:9659921, PubMed:8626397, PubMed:14690600, PubMed:17024186). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation (PubMed:17098938, PubMed:23187700, PubMed:29276085). The CFIm complex acts as a key regulator of cleavage and polyadenylation site choice during APA through its binding to 5'-UGUA-3' elements localized in the 3'-untranslated region (UTR) for a huge number of pre-mRNAs (PubMed:17098938, ...more
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000300291
  • ENSP00000300291
  • ENSG00000167005

Symbol
  • CFIM25
  • CPSF25
  • CPSF5
  • CPSF5
  • CFIM25
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
transcription factor perturbation
0.96
hub protein
0.88
histone modification site profile
0.87
transcription factor binding site profile
0.83
disease perturbation
0.79


IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 77.93   (req: < 5)
Gene RIFs: 16   (req: <= 3)
Antibodies: 191   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 77.93   (req: >= 5)
Gene RIFs: 16   (req: > 3)
Antibodies: 191   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 24
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligand: 0
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
Expression Data (0 Tissues)
No expression data found
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Related Tools (4)
Target Illumination GWAS Analytics (TIGA)
Thumbnail image for Target Illumination GWAS Analytics (TIGA)
TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.
GENEVA
Thumbnail image for GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
Thumbnail image for GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
Thumbnail image for ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
No approved drugs found
Active Ligands (0)
No active ligands found
Protein-Protein Interactions (298)
JMJD6
Tchem
Family:  Enzyme
Novelty:  0.00305479
p_int:  0.957424046
p_ni:  0.042575954
Score:  0.537
Data Source:  BioPlex,STRINGDB
P4HA1
Tchem
Family:  Enzyme
Novelty:  0.01624726
p_int:  0.821166711
p_ni:  0.178833289
Data Source:  BioPlex
CPSF6
Tbio
Novelty:  0.01263178
p_int:  0.759109056
p_ni:  0.240890944
Score:  0.999
Data Source:  BioPlex,STRINGDB
CPSF7
Tbio
Novelty:  0.13068955
Score:  0.999
Data Source:  Reactome,STRINGDB
PCF11
Tbio
Novelty:  0.01882626
Score:  0.995
Data Source:  Reactome,STRINGDB
FIP1L1
Tbio
Novelty:  0.00520044
Score:  0.99
Data Source:  STRINGDB
HNRNPK
Tbio
Novelty:  0.00354731
Score:  0.99
Data Source:  STRINGDB
CPSF4
Tbio
Novelty:  0.00206207
Score:  0.987
Data Source:  STRINGDB
CSTF3
Tbio
Novelty:  0.05260909
Score:  0.984
Data Source:  STRINGDB
CSTF2
Tbio
Novelty:  0.01389909
Score:  0.984
Data Source:  STRINGDB
Nearest Tclin Targets
Nearest Tclin calculations are only available for targets with KEGG Pathway annotations.
Pathways (12)
Gene expression (Transcription) (R-HSA-74160)

Click on a row in the table to change the structure displayed.

Find Similar Targets
Items per page:
1 – 5 of 10
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Gene expression (Transcription)
Reactome
Metabolism of RNA
Reactome
Processing of Capped Intron-Containing Pre-mRNA
Reactome
Processing of Capped Intronless Pre-mRNA
Reactome
Processing of Intronless Pre-mRNAs
Name
Explore in Pharos
Explore in Source
Gene expression (Transcription)
Metabolism of RNA
Processing of Capped Intron-Containing Pre-mRNA
Processing of Capped Intronless Pre-mRNA
Processing of Intronless Pre-mRNAs
Viral Interactions (0)
No viral interactions found
Gene Ontology Terms (33)
Find Similar Targets
Items per page:
10
1 – 8 of 8
GO Term
Evidence
Assigned by
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Direct Assay (IDA)
UniProtKB
Inferred from Physical Interaction (IPI)
UniProtKB
Inferred from Physical Interaction (IPI)
UniProtKB
Inferred from High Throughput Direct Assay (HDA)
UniProtKB
Inferred from Electronic Annotation (IEA)
Ensembl
Inferred from Electronic Annotation (IEA)
InterPro
Disease Associations (null)
No disease associations found
GWAS Traits (18)
GWAS Trait
EFO ID
Study Count
SNP Count
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
high density lipoprotein cholesterol measurement
6
5
8
87.7
chronotype measurement
1
1
0
1
84.8
apolipoprotein A 1 measurement
2
4
4
80.8
phospholipids:total lipids ratio
1
1
1
52.5
very low density lipoprotein cholesterol measurement
1
1
1
52.5
GWAS Trait
EFO ID
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
high density lipoprotein cholesterol measurement
8
87.7
chronotype measurement
0
1
84.8
apolipoprotein A 1 measurement
4
80.8
phospholipids:total lipids ratio
1
52.5
very low density lipoprotein cholesterol measurement
1
52.5
Find similar targets by:
IDG Resources
No IDG generated resources found
Orthologs (13)
1 – 5 of 13
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
nudix hydrolase 21
VGNC:5857
454100
Mouse
MGI:1915469
68219
Rat
RGD:1305766
291877
Horse
nudix hydrolase 21
VGNC:20947
100051355
Cow
nudix hydrolase 21
VGNC:32336
518859
Species
Name
OMA
EggNOG
Inparanoid
Chimp
nudix hydrolase 21
Mouse
Rat
Horse
nudix hydrolase 21
Cow
nudix hydrolase 21
Publication Statistics
PubMed Score 77.93
PubMed score by year
PubTator Score 16.74
PubTator score by year
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Related Publications
Items per page:
0 of 0
PMID
Year
Title