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Tdark
FAM9C
Protein FAM9C

Protein Summary
Description
This gene is a member of a gene family which arose through duplication on the X chromosome. The encoded protein may be localized to the nucleus as the protein contains several nuclear localization signals, and has similarity to a synaptonemal complex protein. [provided by RefSeq, Aug 2011]
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000333995
  • ENSP00000334430
  • ENSG00000187268
  • ENST00000380625
  • ENSP00000369999

Symbol
  • TEX39C
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
cell line
0.45
cellular component
0.41
protein complex
0.4
tissue
0.36
biological term
0.33


Protein Classes
No PANTHER Classes or DTO Classes found
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 1.2   (req: < 5)
Gene RIFs: 2   (req: <= 3)
Antibodies: 8   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 1.2   (req: >= 5)
Gene RIFs: 2   (req: > 3)
Antibodies: 8   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 3
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligand: 0
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
Expression Data (0 Tissues)
No expression data found
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Related Tools (4)
Target Illumination GWAS Analytics (TIGA)
Thumbnail image for Target Illumination GWAS Analytics (TIGA)
TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.
GENEVA
Thumbnail image for GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
Thumbnail image for GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
Thumbnail image for ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
No approved drugs found
Active Ligands (0)
No active ligands found
Protein-Protein Interactions (61)
STX1A
Tbio
Novelty:  0.00087207
p_int:  0.999999995
p_ni:  4e-9
Data Source:  BioPlex
NINL
Tbio
Novelty:  0.00726815
p_int:  0.99999999
p_ni:  9e-9
p_wrong:  1e-9
Data Source:  BioPlex
FYCO1
Tbio
Novelty:  0.06181219
p_int:  0.999999956
p_ni:  4.4e-8
Data Source:  BioPlex
TRIM5
Tbio
Novelty:  0.00289445
p_int:  0.999999931
p_ni:  4.3e-8
p_wrong:  2.7e-8
Data Source:  BioPlex
MIPOL1
Tbio
Novelty:  0.2456
p_int:  0.999999703
p_ni:  2.97e-7
Data Source:  BioPlex
MORC3
Tbio
Novelty:  0.01216555
p_int:  0.999999644
p_ni:  3.56e-7
Data Source:  BioPlex
AGGF1
Tbio
Novelty:  0.02757407
p_int:  0.999999621
p_ni:  3.79e-7
Data Source:  BioPlex
MYO18A
Tbio
Novelty:  0.05058328
p_int:  0.999998892
p_ni:  0.000001109
Data Source:  BioPlex
EXOC1
Tbio
Novelty:  0.01073858
p_int:  0.999997603
p_ni:  0.000002397
Data Source:  BioPlex
KIF4A
Tbio
Novelty:  0.00888393
p_int:  0.999989874
p_ni:  0.000002886
p_wrong:  0.00000724
Data Source:  BioPlex
Nearest Tclin Targets
Nearest Tclin calculations are only available for targets with KEGG Pathway annotations.
Pathways (0)
No pathways found
Viral Interactions (0)
No viral interactions found
Gene Ontology Terms (4)
Find Similar Targets
Items per page:
10
1 – 1 of 1
GO Term
Evidence
Assigned by
Inferred from Biological aspect of Ancestor (IBA)
GO_Central
Disease Associations (null)
No disease associations found
GWAS Traits (4)
GWAS Trait
EFO ID
Study Count
SNP Count
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
childhood onset asthma
1
1
0
1
14.8
asthma
1
1
0
1
11.1
monocyte count
1
1
1
1.7
C-reactive protein measurement
1
1
1
1
GWAS Trait
EFO ID
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
childhood onset asthma
0
1
14.8
asthma
0
1
11.1
monocyte count
1
1.7
C-reactive protein measurement
1
1
IDG Resources
No IDG generated resources found
Orthologs (2)
1 – 2 of 2
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
family with sequence similarity 9 member C
VGNC:3758
735851
Macaque
family with sequence similarity 9 member C
711039
Species
Name
OMA
EggNOG
Inparanoid
Chimp
family with sequence similarity 9 member C
Macaque
family with sequence similarity 9 member C
Publication Statistics
PubMed Score 1.20
PubMed score by year
PubTator Score 1.25
PubTator score by year
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Related Publications
Items per page:
0 of 0
PMID
Year
Title