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Tbio
CHMP6
Charged multivesicular body protein 6

Protein Summary
Description
Probable core component of the endosomal sorting required for transport complex III (ESCRT-III) which is involved in multivesicular bodies (MVBs) formation and sorting of endosomal cargo proteins into MVBs. MVBs contain intraluminal vesicles (ILVs) that are generated by invagination and scission from the limiting membrane of the endosome and mostly are delivered to lysosomes enabling degradation of membrane proteins, such as stimulated growth factor receptors, lysosomal enzymes and lipids. The MVB pathway appears to require the sequential function of ESCRT-O, -I,-II and -III complexes. ESCRT-III proteins mostly dissociate from the invaginating membrane before the ILV is released. The ESCRT machinery also functions in topologically equivalent membrane fission events, such as the terminal stages of cytokinesis and the budding of enveloped viruses (HIV-1 and other lentiviruses). ESCRT-III proteins are believed to mediate the necessary vesicle extrusion and/or membrane fission activities, ...more
Uniprot Accession IDs
Gene Name
Ensembl ID
  • ENST00000325167
  • ENSP00000317468
  • ENSG00000176108

Symbol
  • VPS20
  • VPS20
Illumination Graph
Knowledge Table
Most Knowledge About
Knowledge Value (0 to 1 scale)
disease perturbation
0.87
cellular component
0.73
interacting protein
0.72
histone modification site profile
0.69
virus perturbation
0.64


Protein Classes
IDG Development Level Summary
Tdark

These are targets about which virtually nothing is known. They do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 32.36   (req: < 5)
Gene RIFs: 6   (req: <= 3)
Antibodies: 149   (req: <= 50)
Tbio

These targets do not have known drug or small molecule activities
- AND - satisfy two or more of the following criteria:

Pubmed score: 32.36   (req: >= 5)
Gene RIFs: 6   (req: > 3)
Antibodies: 149   (req: > 50)

- OR - satisfy the following criterion:

Gene Ontology Terms: 15
Tchem

Target has at least one ChEMBL compound with an activity cutoff of < 30 nM - AND - satisfies the preceding conditions

Active Ligand: 0
Tclin

Target has at least one approved drug - AND - satisfies the preceding conditions

Active Drug: 0
Protein Sequence and Structure
Residue Counts
Protein Sequence
ProtVista Viewer
Expression Data (0 Tissues)
No expression data found
Related Tools
Target Illumination GWAS Analytics (TIGA)
Thumbnail image for Target Illumination GWAS Analytics (TIGA)
TIGA scores and ranks GWAS discovered associations according to the quantity and quality of the evidence supporting the association.
GENEVA
Thumbnail image for GENEVA
GENEVA (GENe Expression Variance Analysis) allows you to identify RNA-sequencing datasets from the Gene Expression Omnibus (GEO) that contain conditions modulating a gene or a gene signature.
GlyGen
Thumbnail image for GlyGen
GlyGen is a data integration and dissemination project for carbohydrate and glycoconjugate related data.
ARCHS4
Thumbnail image for ARCHS4
ARCHS4 provides access to gene-function predictions based on RNA-seq co-expression, and gene expression levels across cell and tissues.
Approved Drugs (0)
No approved drugs found
Active Ligands (0)
No active ligands found
Protein-Protein Interactions (108)
RIPPLY1
Tdark
Novelty:  0.11705603
p_int:  0.917266662
p_ni:  0.082626915
p_wrong:  0.000106423
Score:  0.379
Data Source:  BioPlex,STRINGDB
SUN2
Tbio
Novelty:  0.01387591
p_int:  0.755130058
p_ni:  0.244850385
p_wrong:  0.000019557
Score:  0.259
Data Source:  BioPlex,STRINGDB
VPS25
Tbio
Novelty:  0.03002488
Score:  0.999
Data Source:  STRINGDB
VPS4A
Tbio
Novelty:  0.01508121
Score:  0.999
Data Source:  STRINGDB
VPS36
Tbio
Novelty:  0.03382542
Score:  0.998
Data Source:  STRINGDB
SNF8
Tbio
Novelty:  0.04841708
Score:  0.997
Data Source:  STRINGDB
CHMP3
Tbio
Novelty:  0.01958573
Score:  0.996
Data Source:  STRINGDB
CHMP2A
Tbio
Novelty:  0.00169253
Score:  0.996
Data Source:  STRINGDB
VPS28
Tbio
Novelty:  0.02927315
Score:  0.994
Data Source:  STRINGDB
TSG101
Tbio
Novelty:  0.00211746
Score:  0.993
Data Source:  STRINGDB
Nearest Tclin Targets
Nearest Tclin calculations are only available for targets with KEGG Pathway annotations.
Pathways (15)
Autophagy (R-HSA-9612973)

Click on a row in the table to change the structure displayed.

Find Similar Targets
Items per page:
1 – 5 of 13
Data Source
Name
Explore in Pharos
Explore in Source
Reactome
Autophagy
Reactome
Budding and maturation of HIV virion
Reactome
Cellular responses to external stimuli
Reactome
Disease
Reactome
Endosomal Sorting Complex Required For Transport (ESCRT)
Name
Explore in Pharos
Explore in Source
Autophagy
Budding and maturation of HIV virion
Cellular responses to external stimuli
Disease
Endosomal Sorting Complex Required For Transport (ESCRT)
Viral Interactions (0)
No viral interactions found
Disease Associations ()
No disease associations found
GWAS Traits (10)
GWAS Trait
EFO ID
Study Count
SNP Count
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
wellbeing measurement
2
1
2
64
mathematical ability
2
1
2
56.2
IGF-1 measurement
1
1
1
51.4
2
2
1
6.1
49.2
neuroticism measurement
2
2
1
5.8
43.9
GWAS Trait
EFO ID
Beta Count
Odds Ratio
Evidence (Mean Rank Score)
Provenance
wellbeing measurement
2
64
mathematical ability
2
56.2
IGF-1 measurement
1
51.4
1
6.1
49.2
neuroticism measurement
1
5.8
43.9
Find similar targets by:
IDG Resources
No IDG generated resources found
Orthologs (16)
1 – 5 of 16
Species
Name
Source ID
Gene ID
OMA
EggNOG
Inparanoid
Chimp
charged multivesicular body protein 6
VGNC:12051
746104
Macaque
charged multivesicular body protein 6
718353
Mouse
MGI:3583942
208092
Rat
RGD:1565325
287873
Dog
charged multivesicular body protein 6
VGNC:51941
608361
Species
Name
OMA
EggNOG
Inparanoid
Chimp
charged multivesicular body protein 6
Macaque
charged multivesicular body protein 6
Mouse
Rat
Dog
charged multivesicular body protein 6
Publication Statistics
PubMed Score 32.36
PubMed score by year
PubTator Score 13.41
PubTator score by year
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Related Publications
Items per page:
0 of 0
PMID
Year
Title