| Tdark | Protocadherin beta-14 |
Potential calcium-dependent cell-adhesion protein. May be involved in the establishment and maintenance of specific neuronal connections in the brain.
This gene is a member of the protocadherin beta gene cluster, one of three related gene clusters tandemly linked on chromosome five. The gene clusters demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The beta cluster contains 16 genes and 3 pseudogenes, each encoding 6 extracellular cadherin domains and a cytoplasmic tail that deviates from others in the cadherin superfamily. The extracellular domains interact in a homophilic manner to specify differential cell-cell connections. Unlike the alpha and gamma clusters, the transcripts from these genes are made up of only one large exon, not sharing common 3' exons as expected. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins. Their specific functions are unknown but they most likely play a critical role in the establishment and function of specific cell-cell neural connections. [provided by RefSeq, Jul 2008]
This gene is a member of the protocadherin beta gene cluster, one of three related gene clusters tandemly linked on chromosome five. The gene clusters demonstrate an unusual genomic organization similar to that of B-cell and T-cell receptor gene clusters. The beta cluster contains 16 genes and 3 pseudogenes, each encoding 6 extracellular cadherin domains and a cytoplasmic tail that deviates from others in the cadherin superfamily. The extracellular domains interact in a homophilic manner to specify differential cell-cell connections. Unlike the alpha and gamma clusters, the transcripts from these genes are made up of only one large exon, not sharing common 3' exons as expected. These neural cadherin-like cell adhesion proteins are integral plasma membrane proteins. Their specific functions are unknown but they most likely play a critical role in the establishment and function of specific cell-cell neural connections. [provided by RefSeq, Jul 2008]
Comments
| Disease | Target Count | P-value |
|---|---|---|
| lung carcinoma | 2844 | 5.32447273900821E-18 |
| Breast cancer | 3099 | 2.50989713784915E-4 |
| group 4 medulloblastoma | 1875 | 0.00177220030101987 |
| invasive ductal carcinoma | 2950 | 0.00351437053939673 |
| ovarian cancer | 8492 | 0.0128463847549095 |
| atypical teratoid/rhabdoid tumor | 1095 | 0.0229114689402184 |
| aldosterone-producing adenoma | 664 | 0.0474756067810426 |
| Disease | log2 FC | p |
|---|---|---|
| group 4 medulloblastoma | 1.800 | 0.002 |
| atypical teratoid/rhabdoid tumor | 1.200 | 0.023 |
| aldosterone-producing adenoma | -1.131 | 0.047 |
| lung carcinoma | 2.000 | 0.000 |
| Breast cancer | -1.300 | 0.000 |
| invasive ductal carcinoma | -1.400 | 0.004 |
| ovarian cancer | -1.100 | 0.013 |
| Accession | Q9Y5E9 B4DPE2 Q4FZA4 Q4KN11 PCDH-beta-14 |
| Symbols |
PCDH-BETA14 |
| Species | Source |
|---|---|
| Chimp | OMA EggNOG Inparanoid |
| Mouse | OMA EggNOG Inparanoid |
| Rat | OMA EggNOG Inparanoid |
| Cow | OMA Inparanoid |
| PMID | Text |
|---|---|
| 25566775 | PCDHB14- and GABRB1-like nervous system developmental genes are altered during early neuronal differentiation of NCCIT cells treated with ethanol |
MEIRGALDLRKRQVLIFLVLLGLSRAGTESAHYSVAEETEIGSFVANLARDLGLGVEELSSREARVVSDD 1 - 70 NKKYLHLDLLTGNLLLNEKLDRDELCGSTEPCVLHFQVVLENPLQFFRFELCVKDINDHSPTFLDKEILI 71 - 140 KISEGTTVGATFLMESAQDLDVGSNSLQNYTISPNSHFYIKIPDSSDRKIYPELVLDRALDYEQEAELRL 141 - 210 TLTAVDGGSPPKSGTTLVLIKVLDINDNAPEFPQSLYEVQVPEDRPLGSWIATISAKDLDAGNYGKISYT 211 - 280 FFHASEDIRKTFEINPISGEVNLRSPLDFEVIQSYTINIQATDGGGLSGKCTLLVKVMDINDNPPEVTIS 281 - 350 SITKRIPENASETLVALFSILDQDSGDNGRMICSIQDNLPFFLKPTFKNFFTLVSEKALDRESQAEYNIT 351 - 420 ITVTDLGTPRLKTEYNITVLLSDVNDNAPTFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVNYSL 421 - 490 LPPQDRHLPLASLVSINADNGHLFALRSLDYEALQEFEFRVGATDRGSPALSSEALVRVLVLDANDNSPF 491 - 560 VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL 561 - 630 SERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSL 631 - 700 FLFSVLLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSGTNEFKFLKPI 701 - 770 IPNFQVHDTGRNMGEIENFRNSFGLNIQ 771 - 798 //
| PMID | Year | Title |
|---|---|---|
| 25566775 | 2015 | PCDHB14- and GABRB1-like nervous system developmental genes are altered during early neuronal differentiation of NCCIT cells treated with ethanol. |
| 25416956 | 2014 | A proteome-scale map of the human interactome network. |
| 16344560 | 2006 | Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. |
| 15489334 | 2004 | The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). |
| 15372022 | 2004 | The DNA sequence and comparative analysis of human chromosome 5. |
| 14702039 | 2004 | Complete sequencing and characterization of 21,243 full-length human cDNAs. |
| 12477932 | 2002 | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. |
| 12231349 | 2002 | Protocadherins. |
| 11322959 | 2001 | The human and murine protocadherin-beta one-exon gene families show high evolutionary conservation, despite the difference in gene number. |
| 11230163 | 2001 | Comparative DNA sequence analysis of mouse and human protocadherin gene clusters. |
| More... |
