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Tdark Erythroid differentiation-related factor 1

Transcription factor involved in erythroid differentiation. Involved in transcriptional activation of the globin gene.

This gene may play a role in erythroid cell differentiation. The encoded protein inhibits DNA binding of the erythroid transcription factor GATA-1 and may regulate the expression of alpha-globin and gamma-globin. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Feb 2014]

 Comments

Property Summary

NCBI Gene PubMed Count 9
PubMed Score 4.21
PubTator Score 6.38

Knowledge Summary

Patent

No data available

TINX Plot

  Disease Relevance (6)

Disease Z-score Confidence
Carcinoma 2,147 1.0
dermatomyositis 933
juvenile dermatomyositis 1,189
malignant mesothelioma 3,162
ovarian cancer 8,484
tuberculosis and treatment for 6 months 686

Expression

  Differential Expression (5)

Disease log2 FC p
malignant mesothelioma 1.200 0.000
juvenile dermatomyositis 1.047 0.000
tuberculosis and treatment for 6 months 1.600 0.000
ovarian cancer 1.500 0.001
dermatomyositis 1.100 0.002

Synonym

Accession Q3B7T1 B2RC65 Q3KR40 Q4G190 Q5VZQ4 Q8IZ74 Q9Y3W4
Symbols C10orf137

Gene

EDRF1

 GO Component (1)

 GO Process (2)

 Compartment GO Term (10)

Pathway (1)

 UniProt Keyword (10)

Gene RIF (2)

PMID Text
20379614 Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
12609092 EDRF1 regulated alpha- and gamma-globin gene synthesis by modulating DNA-binding activity of GATA-1 transcription factor.

AA Sequence 

MGDAKEAGAEGPPAGAAARGGLSLLSQGESEESSAQGSALFLGGNEVKSRAVVKYSSAPPRTAFARLEEK      1 - 70
TDLKLPPANWLRESAKLGPAGTTILGNSKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSK     71 - 140
SHVSMAVHRIGRTLLLDELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLY    141 - 210
YSINGDGAAQPVSSTAEQQESSSSDQTNDSEGASWPAPFEMPSSVSEDPSASSQGSEPLEPSYIVGHVAS    211 - 280
APKEQNLITLFNDGEHSQGLKNDFVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKPINVLTG    281 - 350
IDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSNFSTKVIKDIAQNILSFLKSNCTKEGHT    351 - 420
YWLFKASGSDIVKLYDLTTLCEETEDKYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCLK    421 - 490
LLDKSRHPQIIASANYMLSELFQLDEPKKEENSESPLNENSDESYSEEEEEMPDSDENGSYSTSSDPSDD    491 - 560
SKAVAIIKSVGELSVPEKYKSIHQIRPSCAFPVCHDTEERCRLVLSYVLEGLKSVDSSIKKESDLPAADP    561 - 630
STPIPLKYEDESSRGGPEGLEKQMALFLDKMGSLQKGNYSSQSGMIPGSWQHKMKLQLILKSSKAYYVLS    631 - 700
DAAMSLQKYGRALRYIKLALQSHDTYCCLCTNMLSEVLLFLSQYLTLCGDIQLMLAQNANNRAAHLEEFH    701 - 770
YQTKEDQEILHSLHRESSCQGFAWATDLSTDLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRM    771 - 840
GNIRNEIGVFYMNQAAALQSERLVSKSVSAAEQQLWKKSFSCFEKGIHNFESIEDATNAALLLCNTGRLM    841 - 910
RICAQAHCGAGDELKREFSPEEGLYYNKAIDYYLKALRSLGTRDIHPAVWDSVNWELSTTYFTMATLQQD    911 - 980
YAPLSRKAQEQIEKEVSEAMMKSLKYCDVDSVSARQPLCQYRAATIHHRLASMYHSCLRNQVGDEHLRKQ    981 - 1050
HRVLADLHYSKAAKLFQLLKDAPCELLRVQLERVAFAEFQMTSQNSNVGKLKTLSGALDIMVRTEHAFQL   1051 - 1120
IQKELIEEFGQPKSGDAAAAADASPSLNREEVMKLLSIFESRLSFLLLQSIKLLSSTKKKTSNNIEDDTI   1121 - 1190
LKTNKHIYSQLLRATANKTATLLERINVIVHLLGQLAAGSAASSNAVQ                         1191 - 1238
//

Text Mined References (13)

PMID Year Title
25416956 2014 A proteome-scale map of the human interactome network.
21269460 2011 Initial characterization of the human central proteome.
20379614 Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
18763094 2001 cDNA cloning and function analysis of two novel erythroid differentiation related genes.
18759052 2002 Antisense EDRF1 gene inhibited GATA-1 transcription factor DNA-binding activity in K562 cells.
18726394 2001 Initial function analysis of a novel erythroid differentiation related gene EDRF1.
17974005 2007 The full-ORF clone resource of the German cDNA Consortium.
16959974 2006 The consensus coding sequences of human breast and colorectal cancers.
15489334 2004 The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).
15164054 2004 The DNA sequence and comparative analysis of human chromosome 10.
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